1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTTAGACTCAGAGTTCTTAGTTTCAACATCCATTGATGGATCTGCGAGAATATGGAAGATAGATGAGGGCGCACCACTGGTCAATTTGACTCGATCCTCGgtatgttatgataattttcttttatttatatttacttgttgagatggttgaaattttgacttcttttccccactttttttctttgtatgcctacag
species | Zea mays |
transcript | GRMZM2G158489_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTCAATTTGACTCGATCCTCG GATGAGAAGATCGAGTGCTGCCGCTTTTCTAGGGATGGCATGAAACCGTTCEST: gi|32912764|gb|CF017576.1|CF017576
genomic: GTCAATTTGACTCGATCCTCGgtatgttatg ... atgcctacagGATGAGAAGATCGAGTGCTGCCGCTTTTCTAGGGATGGCATGAAACCGTTC
EST: TATGGAAGATAGATGAGGGCGCACCACTGGTCAATTTGACTCGATCCTCG GATGAGAAGATCGAGTGCTGCCGCTTTTCTAGGGATGGCATGAAACCGTTCEST: gi|78115282|gb|DV533670.1|DV533670
genomic: TATGGAAGATAGATGAGGGCGCACCACTGGTCAATTTGACTCGATCCTCGgtatgttatg ... atgcctacagGATGAGAAGATCGAGTGCTGCCGCTTTTCTAGGGATGGCATGAAACCGTTC
EST: GACTCGATCCTCG GATGAGAAGATCGAGTGCTGCCGCTTTTCTAGGGATGGCATGAAACCGTTCEST: gi|76287602|gb|DV027170.1|DV027170
genomic: GACTCGATCCTCGgtatgttatg ... atgcctacagGATGAGAAGATCGAGTGCTGCCGCTTTTCTAGGGATGGCATGAAACCGTTC
EST: TGGTCAATTTGACTCGATCCTCG GATGAGAAGATCGAGTGCTGCCGCTTTTCTAGGGATGGCATGAAACCGTTCEST: gi|32834098|gb|CD973776.1|CD973776
genomic: TGGTCAATTTGACTCGATCCTCGgtatgttatg ... atgcctacagGATGAGAAGATCGAGTGCTGCCGCTTTTCTAGGGATGGCATGAAACCGTTC
EST: TATGGAAGATAGATGAGGGCGCACCACTGGTCAATTTGACTCGATCCTCG GATGAGAAGATCGAGTGCTGCCGCTTTTCTAGGGATGGCATGAAACCGTTCEST: gi|86470686|gb|DY237056.1|DY237056
genomic: TATGGAAGATAGATGAGGGCGCACCACTGGTCAATTTGACTCGATCCTCGgtatgttatg ... atgcctacagGATGAGAAGATCGAGTGCTGCCGCTTTTCTAGGGATGGCATGAAACCGTTC
EST: GACTCGATCCTCG GATGAGAAGATCGAGTGCTGCCGCTTTTCTAGGGATGGCATGAAACCGTTCEST: gi|74236583|gb|DT644497.1|DT644497
genomic: GACTCGATCCTCGgtatgttatg ... atgcctacagGATGAGAAGATCGAGTGCTGCCGCTTTTCTAGGGATGGCATGAAACCGTTC
EST: GTCAATTTGACTCGATCCTCG GATGAGAAGATCGAGTGCTGCCGCTTTTTCTAGGGATGGCATGAAACCGTTEST: gi|22490777|gb|BU050700.1|BU050700
genomic: GTCAATTTGACTCGATCCTCGgtatgttatg ... atgcctacagGATGAGAAGATCGAGTGCTGCCGC-TTTTCTAGGGATGGCATGAAACCGTT
EST: TATGGAAGATAGATGAGGTCGCACCACTGGTCAATTTGACTCGATCCTCG GATGAGAAGATCGAGTGCTGCCGCTTTTCTAGGGATGGCATGAAACCGTTC
genomic: TATGGAAGATAGATGAGGGCGCACCACTGGTCAATTTGACTCGATCCTCGgtatgttatg ... atgcctacagGATGAGAAGATCGAGTGCTGCCGCTTTTCTAGGGATGGCATGAAACCGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTAGACTCAGAGTTCTTAGTTTCAACATCCATTGATGGATCTGCGAGAATATGGAAGATAGATGAGGGCGCACCACTGGTCAATTTGACTCGATCCTCGgtatgttatgataattttcttttatttatatttacttgttgagatggttgaaattttgacttcttttccccactttttttctttgtatgcctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA