1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGTAACATATATGAAATAAAATTGGCTTCACAGATTATAGTTCATCTACTAAATTTTTTTGTTCTACACTCTGCAGAAAACTTTAGGGCTCTTTGTACAGgtattttctctctggtctccatggcttattttctcgccagcaaccccacctgagctgatcgttcatgtccatttgttcaccatttcag
species | Zea mays |
transcript | GRMZM2G158237_T05 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAAAACTTTAAGGGCTCTTTGTACAG GTGAAAAAGGTGTCGGGTTCAATGGCAAACCTCTTCACTATAAGGGAACACEST: gi|76010741|gb|DT937911.1|DT937911
genomic: GAAAACTTT-AGGGCTCTTTGTACAGgtattttctc ... accatttcagGTGAAAAAGGTGTCGGGTCCAATGGCAAACCTCTTCACTATAAGGGAACAC
EST: AAANNNNNNNGTTCTACACTCTGCAGAAAACTTTAGGGCTCTTTGTACAG GTGAAAAAGGTGTCGGGTCCAATGGCAAACCTCEST: gi|60346388|gb|DN213361.1|DN213361
genomic: AAATTTTTTTGTTCTACACTCTGCAGAAAACTTTAGGGCTCTTTGTACAGgtattttctc ... accatttcagGTGAAAAAGGTGTCGGGTCCAATGGCAAACCTC
EST: CTCTTTGTACAG GTGAAAAAAGGTGTCGGGTCCAAATGGCATACCTCTTCACTATAAGGGAAC
genomic: CTCTTTGTACAGgtattttctc ... accatttcagGTG-AAAAAGGTGTCGGGTCC-AATGGCAAACCTCTTCACTATAAGGGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTAACATATATGAAATAAAATTGGCTTCACAGATTATAGTTCATCTACTAAATTTTTTTGTTCTACACTCTGCAGAAAACTTTAGGGCTCTTTGTACAGgtattttctctctggtctccatggcttattttctcgccagcaaccccacctgagctgatcgttcatgtccatttgttcaccatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG