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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGgtattcttattatacttctctttttccagcatgttcttttattgattttgattttcgaagtttgtgtactcctttgcacgcctggtgcttcctgcgcttc...

Basic information

species Zea mays
transcript GRMZM2G158237_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158237_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os09g36670.1 (Oryza sativa), 5'ss of exon 3
GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGgtattcttattatacttctctttttccagcatgttcttttattgattttgattttcgaagtttgtgtactc---ctttgcacgcctggtgcttcctgcgcttc
|||||||||| ||||| || ||||| || || || |||||||||||||||| |||||      |||| || ||| | ||| ||  ||||   | || ||  ||     ||||   ||     | | |||      |   ||| |  | || 
GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCAAAAACAGTTGgtaatcttacgcccattcttttcttc-atcatatttatttacaaactt-gagattaatcctttggagacagtggcatagcagattgtggaattcttatgttt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21843567|gb|BQ704148.1|BQ704148
EST:     GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTG                         AAAACTTTAGGGCTCTTTGTACAG
genomic: GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGgtattcttat ... cactctgcagAAAACTTTAGGGCTCTTTGTACAG
EST: gi|211434807|gb|FL427281.1|FL427281
EST:     GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTG                         AAAACTTTAGGGCTCTTTGTACAG
genomic: GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGgtattcttat ... cactctgcagAAAACTTTAGGGCTCTTTGTACAG
EST: gi|211431653|gb|FL404571.1|FL404571
EST:     GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTG                         AAAACTTTAGGGCTCTTTGTACAG
genomic: GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGgtattcttat ... cactctgcagAAAACTTTAGGGCTCTTTGTACAG
EST: gi|211093050|gb|FL420421.1|FL420421
EST:     GTAGAATTGTTATTGGTCTCTATGGGGAGGTCNGTTCCAAAAACAGTTK                         AAAACTTTAGGGCTCTTTGTACAG
genomic: GTAGAATTGTTATTGGTCTCTATGGGGAGGTC-GTTCCAAAAACAGTTGgtattcttat ... cactctgcagAAAACTTTAGGGCTCTTTGTACAG
EST: gi|211109670|gb|FL337450.1|FL337450
EST:     GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTG                         AAAACTTTAGGGCTCTTTGTACAG
genomic: GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGgtattcttat ... cactctgcagAAAACTTTAGGGCTCTTTGTACAG
EST: gi|211534860|gb|FL340389.1|FL340389
EST:     GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTG                         AAAACTTTAGGGCTCTTTGTACAG
genomic: GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGgtattcttat ... cactctgcagAAAACTTTAGGGCTCTTTGTACAG
EST: gi|211300966|gb|FL391501.1|FL391501
EST:     GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTG                         AAAACTTTAGGGCTCTTTGTACAG
genomic: GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGgtattcttat ... cactctgcagAAAACTTTAGGGCTCTTTGTACAG
EST: gi|211229694|gb|FL389659.1|FL389659
EST:     GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTG                         AAAACTTTAGGGCTCTTTGTACAG
genomic: GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGgtattcttat ... cactctgcagAAAACTTTAGGGCTCTTTGTACAG
EST: gi|211256545|gb|FL390498.1|FL390498
EST:     GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTG                         AAAACTTTAGGGCTCTTTGTATAG
genomic: GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGgtattcttat ... cactctgcagAAAACTTTAGGGCTCTTTGTACAG
EST: gi|88755062|gb|DY539203.1|DY539203
EST:     GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTG                         AAAACTTTAGGGCTCTTTGTACAG
genomic: GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGgtattcttat ... cactctgcagAAAACTTTAGGGCTCTTTGTACAG
EST: gi|211521053|gb|FL387965.1|FL387965
EST:     GTAGAATTGTTATTGGTCTCYATGGGGAGGTCGTTCCAAAAACAGTTG                         AAAACTTTTAGGGCTCTTTGTACAG
genomic: GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGgtattcttat ... cactctgcagAAAACTTT-AGGGCTCTTTGTACAG
EST: gi|211182577|gb|FL404772.1|FL404772
EST:     GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTG                         AAAACTTTAGGGCTCTTTGTACAG
genomic: GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGgtattcttat ... cactctgcagAAAACTTTAGGGCTCTTTGTACAG
EST: gi|211057736|gb|FL416996.1|FL416996
EST:     GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTG                         AAAACTTTAGGGCTCTTTGTACAG
genomic: GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGgtattcttat ... cactctgcagAAAACTTTAGGGCTCTTTGTACAG
EST: gi|211402954|gb|FL382690.1|FL382690
EST:     GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTG                         AAAACTTTAGGGCTCTTTGTACAG
genomic: GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGgtattcttat ... cactctgcagAAAACTTTAGGGCTCTTTGTACAG
EST: gi|211194087|gb|FL377670.1|FL377670
EST:     GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTG                         AAAACTTTAGGGCTCTTTGTACAG
genomic: GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGgtattcttat ... cactctgcagAAAACTTTAGGGCTCTTTGTACAG
EST: gi|211373857|gb|FL385822.1|FL385822
EST:     GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTG                         AAAACTTTAGGGCTCTTTGTACAG
genomic: GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGgtattcttat ... cactctgcagAAAACTTTAGGGCTCTTTGTACAG
EST: gi|211211751|gb|FL376364.1|FL376364
EST:     GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTG                         AAAACTTTAGGGCTCTTTGTACAG
genomic: GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGgtattcttat ... cactctgcagAAAACTTTAGGGCTCTTTGTACAG
EST: gi|211061094|gb|FL320234.1|FL320234
EST:     GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTG                         AAAACTTTAGGGCTCTTTGTACAG
genomic: GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGgtattcttat ... cactctgcagAAAACTTTAGGGCTCTTTGTACAG
EST: gi|211341298|gb|FL394244.1|FL394244
EST:     GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTG                         AAAACTTTAGGGCTCTTTGTACAG
genomic: GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGgtattcttat ... cactctgcagAAAACTTTAGGGCTCTTTGTACAG
EST: gi|211076170|gb|FL369895.1|FL369895
EST:     GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTG                         AAAACTTTAGGGCTCTTTGTACAG
genomic: GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGgtattcttat ... cactctgcagAAAACTTTAGGGCTCTTTGTACAG
EST: gi|16916578|gb|BM072902.1|BM072902
EST:     GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTG                         AAAACTTTAGGGCTCTTTGTACAG
genomic: GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGgtattcttat ... cactctgcagAAAACTTTAGGGCTCTTTGTACAG
EST: gi|211163731|gb|FL337956.1|FL337956
EST:     GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTG                         AAAACTTTAGGGCTCTTTGTACAG
genomic: GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGgtattcttat ... cactctgcagAAAACTTTAGGGCTCTTTGTACAG