1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGTATTTGCTTTTCAGTCAACACCAGAGTTAATGTTTGGACTGTACCTTCTGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactttaccttttatatttctccttagtattctaatgaaatggaaaaactgtcctctccaagaacttgcaccaatattcccataaattggtgtgg...
species | Zea mays |
transcript | GRMZM2G157316_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|74240575|gb|DT648489.1|DT648489
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|148951838|gb|EC897605.2|EC897605
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|71305646|gb|DR788962.1|DR788962
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTT-GTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|78076078|gb|DV504512.1|DV504512
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|211167973|gb|FL398205.1|FL398205
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|93013635|gb|EB639155.1|EB639155
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|76017527|gb|DT944697.1|DT944697
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|93014294|gb|EB639814.1|EB639814
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|71305918|gb|DR789090.1|DR789090
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|71448463|gb|DR829513.1|DR829513
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|76281436|gb|DV021004.1|DV021004
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|71433038|gb|DR814088.1|DR814088
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|76914066|gb|DV165397.1|DV165397
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GNNNNNNNGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCEST: gi|149046880|gb|EE048091.2|EE048091
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTT-GTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTC
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GNNNNNNNGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCEST: gi|74237515|gb|DT645429.1|DT645429
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTT-GTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTC
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|148962075|gb|EE012879.2|EE012879
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|149102614|gb|EE188245.2|EE188245
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|50336165|gb|CO531291.1|CO531291
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|74232244|gb|DT640158.1|DT640158
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|148958569|gb|EC904813.2|EC904813
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|89762538|gb|DY690073.1|DY690073
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|71450335|gb|DR831385.1|DR831385
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GNNNNNNNGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCEST: gi|149080963|gb|EE170059.2|EE170059
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTT-GTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTC
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|149105307|gb|EE290799.2|EE290799
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|148999432|gb|EE036384.2|EE036384
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|93013209|gb|EB638729.1|EB638729
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|71417992|gb|DR804275.1|DR804275
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|148999920|gb|EE036969.2|EE036969
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|31354976|gb|CD439333.1|CD439333
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|86470247|gb|DY236617.1|DY236617
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCTCTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|71327756|gb|DR800512.1|DR800512
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GNNNNNNNGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCEST: gi|76281474|gb|DV021042.1|DV021042
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTT-GTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTC
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|89762002|gb|DY689797.1|DY689797
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCCCTATCACAGCATCATCGCTCCTCGAGATCCTGTCCEST: gi|71438421|gb|DR819471.1|DR819471
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|149070467|gb|EE158870.2|EE158870
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTATTTGCTTTTCAGTCAACACCAGAGTTAATGTTTGGACTGTACCTTCTGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactttaccttttatatttctccttagtattctaatgaaatggaaaaactgtcctctccaagaacttgcaccaatattcccataaattggtgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaac