1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCACACTGGAGCTCTTTGTGCCATGAAAGAGGTGAATATAATTCCAGATGATGCTAAATCAGTCGAGTCTCTGAAGCAATTGGAACAGgtatggttttatttcattgctgtttattccgcactaatggtaatatggtatcactacaattgaactatgtgattgttccccaccaaaatttgctttcaga...
species | Zea mays |
transcript | GRMZM2G156800_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TAATTCCAGATGATGCTAAATCAGTCGAGTCTCTGAAGCAATTGGAACAG GAAATTAAGTTTCTTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTATEST: gi|22542085|gb|BU092523.1|BU092523
genomic: TAATTCCAGATGATGCTAAATCAGTCGAGTCTCTGAAGCAATTGGAACAGgtatggtttt ... tttctttcagGAAATTAAGTTTCTTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTAT
EST: TGCTAAATCAGTCGAGTCTCTGAAGCAATTGGAACAG GAAATTAAGTTTCTTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTATEST: gi|22473422|gb|BU037902.1|BU037902
genomic: TGCTAAATCAGTCGAGTCTCTGAAGCAATTGGAACAGgtatggtttt ... tttctttcagGAAATTAAGTTTCTTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTAT
EST: AATCAGTCGAGTCTCTGAAGCAATTGGAACAG GAAATTAAGTTTCTTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTATEST: gi|50338068|gb|CO533194.1|CO533194
genomic: AATCAGTCGAGTCTCTGAAGCAATTGGAACAGgtatggtttt ... tttctttcagGAAATTAAGTTTCTTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTAT
EST: TAATTCCAGATGATGCTAAATCAGTCGAGTCTCTGAAGCAATTGGAACAG GAAATTAAGTTTCTTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTATEST: gi|87157200|gb|DY401989.1|DY401989
genomic: TAATTCCAGATGATGCTAAATCAGTCGAGTCTCTGAAGCAATTGGAACAGgtatggtttt ... tttctttcagGAAATTAAGTTTCTTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTAT
EST: TAATTCCAGATGATGCTAAATCAGTCGAGTCTCTGAAGCAATTGGAACAG GAAATTAAGTTTCTTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTATEST: gi|26558715|gb|CA830950.1|CA830950
genomic: TAATTCCAGATGATGCTAAATCAGTCGAGTCTCTGAAGCAATTGGAACAGgtatggtttt ... tttctttcagGAAATTAAGTTTCTTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTAT
EST: TAATTCCAGATGATGCTAAATCAGTCGAGTCTCTGAAGCAATTGGAACAG GAAATTAAGTTTCTTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTAT
genomic: TAATTCCAGATGATGCTAAATCAGTCGAGTCTCTGAAGCAATTGGAACAGgtatggtttt ... tttctttcagGAAATTAAGTTTCTTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACACTGGAGCTCTTTGTGCCATGAAAGAGGTGAATATAATTCCAGATGATGCTAAATCAGTCGAGTCTCTGAAGCAATTGGAACAGgtatggttttatttcattgctgtttattccgcactaatggtaatatggtatcactacaattgaactatgtgattgttccccaccaaaatttgctttcaga
- - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA