Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTACAAGCCTGGTTACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatcagctaaccttttttccttctatcctgacgtttatgtgagttgtatttctgtgtgattatcaaaaagctttgcctttgtacatcgtaatttataaatttctatttgtttctcatttttgcatttttttttctag

Basic information

species Zea mays
transcript GRMZM2G156734_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G156734_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g36740.4 (Oryza sativa), 5'ss of exon 4
TTGTACAAGCCTGGTTACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgt-----tatcagctaaccttttttccttctatcctgacgtttatgtgagttgtatttctgtgtgattatcaaaaagctttgcctttgtacatcgtaatttataaatttctatttgtttctcatttttgcatttttttttctag
|  ||||||||||| || ||||||||| ||||||| ||||||||||| ||||| |||||||| ||||| ||      ||     ||   | ||   |  ||||||     || ||||| |   ||||||| |||| ||| ||| |      |||  | |||     |||  ||| ||     | || ||||  | | |  |  | || || ||
TCATACAAGCCTGGCTATACTGCCCCACCCCAGGTACATCATGATGAGACTACTATAGAGATCAGgttggtatcttcattcatgaaaaatcttctttcgtatcctagtacttttgtgaataa-atttctgagtgaatataaaataatc---cctaagcaca-----attcttaacttc----tcgtgtctctatctcg--tcctattctccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33101150|gb|CF061110.1|CF061110
EST:     GCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: GCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|76909618|gb|DV163452.1|DV163452
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|31558678|gb|CD527890.1|CD527890
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|71332393|gb|DR803153.1|DR803153
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGAAACCGTTTGGATTTACTTGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|78545094|gb|DV622592.1|DV622592
EST:     CATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTTGATTTACATGATCCTAG
genomic: CATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|6031346|gb|AW076203.1|AW076203
EST:     CATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCATTTGGATTTACATGATCCTAG
genomic: CATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|32924962|gb|CF029774.1|CF029774
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|29130457|gb|CB381161.1|CB381161
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|32924741|gb|CF029553.1|CF029553
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|31406064|gb|CD484796.1|CD484796
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|32925907|gb|CF030719.1|CF030719
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|28390336|gb|CB250165.1|CB250165
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|29130571|gb|CB381275.1|CB381275
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|78125041|gb|DV543425.1|DV543425
EST:     ATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: ATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|32925165|gb|CF029977.1|CF029977
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|5325050|gb|AI783241.1|AI783241
EST:     CATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCATTTGGATTTACATGATCCTAG
genomic: CATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|78074789|gb|DV503223.1|DV503223
EST:     CATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: CATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|211448719|gb|FL094703.1|FL094703
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|32926687|gb|CF031499.1|CF031499
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|28361582|gb|CB239938.1|CB239938
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGGAGATTGGACCATCTCTGGCAAACCGTTTGGATTTACATGATCCT
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGT-GGAGATTGGACCATCTCTGGC-AACCGTTTGGATTTACATGATCCT
EST: gi|32925808|gb|CF030620.1|CF030620
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|6031347|gb|AW076204.1|AW076204
EST:     CATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCATTTGGATTTACATGATCCTAG
genomic: CATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|32925763|gb|CF030575.1|CF030575
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|211010477|gb|FL237651.1|FL237651
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGA
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGA
EST: gi|76013718|gb|DT940888.1|DT940888
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TCGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|22818791|gb|BU498881.1|BU498881
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|101402591|gb|EB822839.1|EB822839
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|5846862|gb|AI999945.1|AI999945
EST:     CATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCATTTGGATTTACATGATCCTAG
genomic: CATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|29947111|gb|CB816487.1|CB816487
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|30307008|gb|CD001681.1|CD001681
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|32926380|gb|CF031192.1|CF031192
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|32924716|gb|CF029528.1|CF029528
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|211010485|gb|FL237659.1|FL237659
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|32840136|gb|CD979817.1|CD979817
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|76936722|gb|DV174850.1|DV174850
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG