1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTCCCGAAAGGAGAAGGAGGAGGACTTCATGGCCATGAAAGGCACCAAGCTGCCGCAGCGCCCCAAGCGGCGGCCAAAGATCATCGAGAAGACCGTCAGTgtgcgtgcctgtgcctcttttttttttgtctggtcctccattagccgctgcctattaccggtggtcgtcgacatcagtaatccatggattagtgttatatataaactgacatgatctcgtcggtgcctgtcttgtgcgctcgcgcag
species | Zea mays |
transcript | GRMZM2G156606_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGCCGCAGCGCCCCAAGCGGCGGCCAAAGATCATCGAGAAGACCGTCAGT GCGATCTGTCCCGGGGTGTGGCTGACGGATGCGACCAGGAGCAGGTACGAGEST: gi|5757233|gb|AI964520.1|AI964520
genomic: TGCCGCAGCGCCCCAAGCGGCGGCCAAAGATCATCGAGAAGACCGTCAGTgtgcgtgcct ... gctcgcgcagGCGATCTGTCCCGGGGTGTGGCTGACGGATGCGACCAGGAGCAGGTACGAG
EST: TGCCGCAGCGCCCCAAGCGGCGGCCAAAGATCATCGAGAAGACCGTCAGT GCGATCTGTCCCGGGGTGTGGCTGACGGATGCGACCAGGAGCAGGTACGAGEST: gi|94479883|gb|EB708841.1|EB708841
genomic: TGCCGCAGCGCCCCAAGCGGCGGCCAAAGATCATCGAGAAGACCGTCAGTgtgcgtgcct ... gctcgcgcagGCGATCTGTCCCGGGGTGTGGCTGACGGATGCGACCAGGAGCAGGTACGAG
EST: TGCCGCAGCGCCCCAAGCGGCGGCCAAAGATCATCGAGAAGACCGTCAGT GCGATCTGTCCCGGGGTGTGGCTGACGGATGCGACCAGGAGCAGGTACGAGEST: gi|71313145|gb|DR793103.1|DR793103
genomic: TGCCGCAGCGCCCCAAGCGGCGGCCAAAGATCATCGAGAAGACCGTCAGTgtgcgtgcct ... gctcgcgcagGCGATCTGTCCCGGGGTGTGGCTGACGGATGCGACCAGGAGCAGGTACGAG
EST: TGCCGCAGCGCCCCAAGCGGCGGCCAAAGATCATCGAGAAGACCGTCAGT GCGATCTGTCCCGGGGTGTGGCTGACGGATGCGACCAGGAGCAGGTACGAG
genomic: TGCCGCAGCGCCCCAAGCGGCGGCCAAAGATCATCGAGAAGACCGTCAGTgtgcgtgcct ... gctcgcgcagGCGATCTGTCCCGGGGTGTGGCTGACGGATGCGACCAGGAGCAGGTACGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCCGAAAGGAGAAGGAGGAGGACTTCATGGCCATGAAAGGCACCAAGCTGCCGCAGCGCCCCAAGCGGCGGCCAAAGATCATCGAGAAGACCGTCAGTgtgcgtgcctgtgcctcttttttttttgtctggtcctccattagccgctgcctattaccggtggtcgtcgacatcagtaatccatggattagtgttatatataaactgacatgatctcgtcggtgcctgtcttgtgcgctcgcgcag
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