Sequence
atgc intronic sequence ATGC exonic sequenceGAAAGGATGTTCTTGCAAAAGCGAAGACAGGAACAGGGAAAACAGTTGCCTTTTTGgtactccttgcctaaagcccaactgatcaatttgactgtcgtagcagttttctcagcgatataactactggattaacccatgtgactgagttctaatttcttttagcttccagccatcgaagttctctctgcattacctcgttcaacttctataaatttgctggtgatgtgccctaccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G156158_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA16G02880.1 (Glycine max), 5'ss of exon 3
GAAAGGATGTTCTTGCAAAAGCGAAGACAGGAACAGGGAAAACAGTTGCCTTTTTGgta--ctccttgcctaaagcccaactgatcaatttgactgtcg-tagcagttttctcagcgatataactactggattaacccatgtgactgagttctaatttcttttagcttccagccatcgaagttctctctgcattacctcgttcaacttctataaatttgctggtgatgtgccctaccag
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GTAAGGATGTCCTTGCCAAGGCCAAGACAGGCACCGGAAAAACAGTAGCCTTTTTGgtaagtctcttaatttgtgtttgcctgagtgatttggtggctaatagcctctttatcattggaatg-tttcttcatattcctttatgggtgacaattaatg----------------------------------------------------------------------------------
upper sequence: GRMZM2G156158_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA07G06240.1 (Glycine max), 5'ss of exon 3
GAAAGGATGTTCTTGCAAAAGCGAAGACAGGAACAGGGAAAACAGTTGCCTTTTTGgta--ctccttgcctaaagcccaactgatcaatttgactgtcg-tagcagttttctcagcgatataactactggattaacccatgtgactgagttctaatttcttttagcttccagccatcgaagttctctctgcattacctcgttcaacttctataaatttgctggtgatgtgccctaccag
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GTAAGGATGTCCTTGCCAAGGCCAAGACAGGCACCGGAAAAACAGTAGCCTTTTTGgtaagtctcttcatttgtgttttccaaactgaattggtggttaatagcctctttattattgaaatg-tttcttcatattcctttatgggtgacaattaatg----------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211328610|gb|FK972861.1|FK972861EST: ATGTTCTTGCAAAAGCGAAGACAGGAACAGGGAAAACAGTTGCCTTTTTG GGAGCTTGCAAACCAATTGGCTGCTGAGGCCAGGAAGCTTCTCAAGTATCA
genomic: ATGTTCTTGCAAAAGCGAAGACAGGAACAGGGAAAACAGTTGCCTTTTTGgtactccttg ... gccctaccagGGAGCTTGCAAACCAATTGGCTGCTGAGGCCAGGAAGCTTCTCAAGTATCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAAGGATGTTCTTGCAAAAGCGAAGACAGGAACAGGGAAAACAGTTGCCTTTTTGgtactccttgcctaaagcccaactgatcaatttgactgtcgtagcagttttctcagcgatataactactggattaacccatgtgactgagttctaatttcttttagcttccagccatcgaagttctctctgcattacctcgttcaacttctataaatttgctggtgatgtgccctaccag
- - - - - - - - - - CGAAGA