1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GACGTTGAAGATATTGTAGTCAATGGCAATGGGGCGGAGCCTGGTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAGgtattttaaacaaaaaaaacatatgtcctgttattgtagggaactgaaggtccctttctttcaatttactgatgtatatatatgtgcaccgcag
species | Zea mays |
transcript | GRMZM2G155836_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACCEST: gi|71315008|gb|DR794124.1|DR794124
genomic: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAGgtattttaaa ... tgcaccgcagACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACC
EST: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACCEST: gi|87154289|gb|DY399078.1|DY399078
genomic: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAGgtattttaaa ... tgcaccgcagACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACC
EST: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACCEST: gi|149111565|gb|EE190699.2|EE190699
genomic: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAGgtattttaaa ... tgcaccgcagACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACC
EST: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACCEST: gi|89253101|gb|DY624887.1|DY624887
genomic: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAGgtattttaaa ... tgcaccgcagACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACC
EST: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACCEST: gi|211396327|gb|FL436147.1|FL436147
genomic: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAGgtattttaaa ... tgcaccgcagACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACC
EST: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACCEST: gi|76927490|gb|DV171263.1|DV171263
genomic: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAGgtattttaaa ... tgcaccgcagACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACC
EST: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACCEST: gi|211206254|gb|FL246828.1|FL246828
genomic: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAGgtattttaaa ... tgcaccgcagACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACC
EST: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAG ACCATTAGTTACATGGCTGAGCGGEST: gi|21390766|gb|BQ528815.1|BQ528815
genomic: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAGgtattttaaa ... tgcaccgcagACCATTAGTTACATGGCTGAGCGG
EST: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACCEST: gi|19058579|gb|BM737246.1|BM737246
genomic: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAGgtattttaaa ... tgcaccgcagACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACC
EST: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAAGCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACCEST: gi|148971909|gb|EE022686.2|EE022686
genomic: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAGgtattttaaa ... tgcaccgcagACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACC
EST: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACCEST: gi|148932063|gb|EC875411.2|EC875411
genomic: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAGgtattttaaa ... tgcaccgcagACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACC
EST: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACCEST: gi|149009140|gb|EE041278.2|EE041278
genomic: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAGgtattttaaa ... tgcaccgcagACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACC
EST: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACCEST: gi|149078458|gb|EE167238.2|EE167238
genomic: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAGgtattttaaa ... tgcaccgcagACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACC
EST: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACCEST: gi|148961324|gb|EE012052.2|EE012052
genomic: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAGgtattttaaa ... tgcaccgcagACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACC
EST: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACCEST: gi|60401199|gb|DN234006.1|DN234006
genomic: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAGgtattttaaa ... tgcaccgcagACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACC
EST: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACCEST: gi|5566821|gb|AI881687.1|AI881687
genomic: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAGgtattttaaa ... tgcaccgcagACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACC
EST: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACCEST: gi|74234442|gb|DT642356.1|DT642356
genomic: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAGgtattttaaa ... tgcaccgcagACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACC
EST: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACCEST: gi|149095924|gb|EE181586.2|EE181586
genomic: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAGgtattttaaa ... tgcaccgcagACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACC
EST: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACCEST: gi|71446043|gb|DR827093.1|DR827093
genomic: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAGgtattttaaa ... tgcaccgcagACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACC
EST: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACC
genomic: GTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAGgtattttaaa ... tgcaccgcagACCATTAGTTACATGGCTGAGCGGGTGGTAGGTCATGGGTCCTTCGGAACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGTTGAAGATATTGTAGTCAATGGCAATGGGGCGGAGCCTGGTCATATCATAGTGACCAGCATTGATGGGAGAAATGGGCAGGCAAAGCAGgtattttaaacaaaaaaaacatatgtcctgttattgtagggaactgaaggtccctttctttcaatttactgatgtatatatatgtgcaccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG