1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGCATGTGACATTTATGAGAACATGGGCATGAAGTTCAATGAGTTCATTGTCTTCCTGTGCCTTGTTTATCTTCTAGATGATCCTGCAGTGTCTGAAGTTgtatccttgacacaatacaaaaatatctgctgttcaatattcacttttgtctctttctttagtgcaggaaatccacacgatgtgttaatgttcttaattt...
species | Zea mays |
transcript | GRMZM2G155822_T01 |
intron # | 3 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: TCTTCCTGTGCCTTGTTTATCTTCTAGATGATCCTGCAGTGTCTGAAGTT AGAAAAAGAATGGGGTTAGGTAGCCTTGAACCAACATTTGAAACATTGGTCEST: gi|211109096|gb|FL481538.1|FL481538
genomic: TCTTCCTGTGCCTTGTTTATCTTCTAGATGATCCTGCAGTGTCTGAAGTTgtatccttga ... gatattttagAGAAAAAGAATGGGGTTAGGTAGCCTTGAACCAACATTTGAAACATTGGTC
EST: TTCTAGATGATCCTGCAGTGTCTGAAGTT AGAAAAAGAATGGGGTTAGGTAGCCTTGAACCAACATTTGAAACATTGGTC
genomic: TTCTAGATGATCCTGCAGTGTCTGAAGTTgtatccttga ... gatattttagAGAAAAAGAATGGGGTTAGGTAGCCTTGAACCAACATTTGAAACATTGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCATGTGACATTTATGAGAACATGGGCATGAAGTTCAATGAGTTCATTGTCTTCCTGTGCCTTGTTTATCTTCTAGATGATCCTGCAGTGTCTGAAGTTgtatccttgacacaatacaaaaatatctgctgttcaatattcacttttgtctctttctttagtgcaggaaatccacacgatgtgttaatgttcttaattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaaaat