1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATGGTTTTTATGATGCAGGCCGAGATATGCCATTCATGTCATTAGAGGAGTATGAAAGGAGTCTTGGGCTGTATGCACGGGAGGTTATTCTCTTGGACAGgttagggcccattcctatccatatgttgctgtctacaatcttttgccatgctgtatgttctaatattcttttgttttaattag
species | Zea mays |
transcript | GRMZM2G155312_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTATGCACGGGAGGTTATTCTCTTGGACAG AGAACAAGATGAAGAATTGGATACAATTGCTTCTTCAGCACAATTACTGCTEST: gi|211243381|gb|FL072661.1|FL072661
genomic: TGTATGCACGGGAGGTTATTCTCTTGGACAGgttagggccc ... ttttaattagAGAACAAGATGAAGAATTGGATACAATTGCTTCTTCAGCACAATTACTGCT
EST: TGTATGCACGGGAGGTTATTCTCTTGGACAG AGAACAAGATGAAGAATTGGATACAATTGCTTCTTCAGCACAATTACTGCTEST: gi|211241149|gb|FL072650.1|FL072650
genomic: TGTATGCACGGGAGGTTATTCTCTTGGACAGgttagggccc ... ttttaattagAGAACAAGATGAAGAATTGGATACAATTGCTTCTTCAGCACAATTACTGCT
EST: TGTATGCACGGGAGGTTATTCTCTTGGACAG AGAACAAGATGAAGAATTGGATACAATTGCTTCTTCAGCACAATTACTGCTEST: gi|211241144|gb|FL072645.1|FL072645
genomic: TGTATGCACGGGAGGTTATTCTCTTGGACAGgttagggccc ... ttttaattagAGAACAAGATGAAGAATTGGATACAATTGCTTCTTCAGCACAATTACTGCT
EST: TGTATGCACGGGAGGTTATTCTCTTGGACAG AGAACAAGATGAAGAATTGGATACAATTGCTTCTTCAGCACAATTACTGCTEST: gi|21760240|gb|BQ635781.1|BQ635781
genomic: TGTATGCACGGGAGGTTATTCTCTTGGACAGgttagggccc ... ttttaattagAGAACAAGATGAAGAATTGGATACAATTGCTTCTTCAGCACAATTACTGCT
EST: TATGAAAGGAGTCTTGGGCTGTATGCACGGGAGGTTATTCTCTTGGACAG AGAACAAGATGAAGAATTGGATACAATCGCTTCTTCAGCACAATTACTGCTEST: gi|211243379|gb|FL072659.1|FL072659
genomic: TATGAAAGGAGTCTTGGGCTGTATGCACGGGAGGTTATTCTCTTGGACAGgttagggccc ... ttttaattagAGAACAAGATGAAGAATTGGATACAATTGCTTCTTCAGCACAATTACTGCT
EST: TGTATGCACGGGAGGTTATTCTCTTGGACAG AGAACAAGATGAAGAATTGGATACAATTGCTTCTTCAGCACAATTACTGCTEST: gi|211241156|gb|FL072657.1|FL072657
genomic: TGTATGCACGGGAGGTTATTCTCTTGGACAGgttagggccc ... ttttaattagAGAACAAGATGAAGAATTGGATACAATTGCTTCTTCAGCACAATTACTGCT
EST: TGTATGCACGGGAGGTTATTCTCTTGGACAG AGAACAAGATGAAGAATTGGATACAATTGCTTCTTCAGCACAATTACTGCT
genomic: TGTATGCACGGGAGGTTATTCTCTTGGACAGgttagggccc ... ttttaattagAGAACAAGATGAAGAATTGGATACAATTGCTTCTTCAGCACAATTACTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGTTTTTATGATGCAGGCCGAGATATGCCATTCATGTCATTAGAGGAGTATGAAAGGAGTCTTGGGCTGTATGCACGGGAGGTTATTCTCTTGGACAGgttagggcccattcctatccatatgttgctgtctacaatcttttgccatgctgtatgttctaatattcttttgttttaattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG