Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCAACTACTACGGCTCCCTCACCCAGGCCTCCACCATCAGAGTCGGCAGCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctattatagacttgactaatactcttctttttactgaaaccaaacatacataacaaagcatattccgtaaggtgctagttgatgttataaaatga...

Basic information

species Zea mays
transcript GRMZM2G155242_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155242_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 3
AGCCAACTACTACGGCTCCCTCACCCAGGCCTCCACCATCAGAGTCGGCAGCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctattatagacttgactaatactcttctttttactgaaaccaaacatacataacaaagcatattccgtaaggtgctagttgatgttataaaatga------
|||||||||||| ||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||| |  | |  ||   | | |   | ||    || ||||  | |      ||  ||  ||       |  | |  |||| |   |  || ||| |      
AGCCAACTACTATGGCTCACTCACCCAGGCGTCCACCATCAGGGTCGGGAGCTACAACGGGGAGGAGATCTACGCGCCCTTCAAGAGCCTCCTGCCCATGgtaatctgtcct-gttttctttgaca---tgctaaccacggaaa--agatggtagtagtaatacactgctaatgtgatagtagtagtgctagtacaatcataacat

upper sequence: GRMZM2G155242_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ37320 (Selaginella moellendorffii), 5'ss of exon 3
AGCCAACTACTACGGCTCCCTCACCCAGGCCTCCACCATCAGAGTCGGCAGCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctattatagacttgactaatactcttctttttactgaaaccaaacatacataacaaagcatattccgtaaggtgctagttgatgttataaaatga
| | || ||||  |||||  | || || || || ||     || | |||   |  |  || |||||||||||||| || ||||||||| | |||||||||||||   |  | |  |     |  | ||    ||||   |     |    ||   |  ||                                        
ACCAAATTACTTTGGCTCAGTTACTCAAGCTTCTACGTGTCGAATTGGCTCTTTTAGAGGAGAGGAGATCTATGCTCCTTTCAAGAGCTTGCTTCCCATGgtaactaacaacaatcaaagatggttcttgagttttggtt----tcttgtatcacttgcag---------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211253253|gb|FL003863.1|FL003863
EST:     GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGG
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGG
EST: gi|31358692|gb|CD443049.1|CD443049
EST:     GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|31359517|gb|CD443874.1|CD443874
EST:     GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCGACATGAAC
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|211032319|gb|FK948200.1|FK948200
EST:     GCTATAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|31353717|gb|CD438074.1|CD438074
EST:     GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|211032317|gb|FK948198.1|FK948198
EST:     CTATAACNGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: CTACAAC-GGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|149104837|gb|EE290302.2|EE290302
EST:     GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|211083904|gb|FL003852.1|FL003852
EST:     GCTACCACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|148934898|gb|EC878944.2|EC878944
EST:     GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|31350876|gb|CD435233.1|CD435233
EST:     GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|211037211|gb|FK948220.1|FK948220
EST:     GCTATAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|149095755|gb|EE181394.2|EE181394
EST:     GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|211034765|gb|FK948208.1|FK948208
EST:     CTATAACGGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: CTACAACGGGG-AGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|32806992|gb|CD959226.1|CD959226
EST:     GATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGGGGCTGGGACATTAGCAACGTGAAC
genomic: GATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|76019942|gb|DT947112.1|DT947112
EST:     GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|211083903|gb|FL003851.1|FL003851
EST:     GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|31357666|gb|CD442023.1|CD442023
EST:     GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACCACATTGTGTTCAGAGGCTGGGACATTAGCAACATGAGC
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|22472362|gb|BU036842.1|BU036842
EST:     GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATA                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|31349014|gb|CD433371.1|CD433371
EST:     GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|211037210|gb|FK948219.1|FK948219
EST:     CTATAACNGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: CTACAAC-GGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|211039659|gb|FK948234.1|FK948234
EST:     GCTATAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|20208127|gb|BQ134201.1|BQ134201
EST:     GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATA                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|211083902|gb|FL003850.1|FL003850
EST:     CTACNACGGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACC-AGACGACATTGGTGTTCGGAGG
genomic: CTACAACGGGG-AGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTG-TGTTCGGAGG
EST: gi|26558443|gb|CA830678.1|CA830678
EST:     GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATA                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|211253248|gb|FL003858.1|FL003858
EST:     GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGG
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGG
EST: gi|211032311|gb|FK948192.1|FK948192
EST:     CTATAACNGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: CTACAAC-GGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|211037207|gb|FK948216.1|FK948216
EST:     GCTATAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|211083899|gb|FL003847.1|FL003847
EST:     CTACCACGGGGAGGAGATCTATGCGCCCGTTCA-GAGCCTCCTTCCCATG                         GTTGA-CCCAGACGACATT
genomic: CTACAACGGGGAGGAGATCTATGCGCC-GTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGT-GAACCCAGACGACATT
EST: gi|211032315|gb|FK948196.1|FK948196
EST:     GCTATAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|211034769|gb|FK948212.1|FK948212
EST:     CTATAACNGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: CTACAAC-GGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|211083895|gb|FL003843.1|FL003843
EST:     GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|211253252|gb|FL003862.1|FL003862
EST:     GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGA
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGA
EST: gi|31359585|gb|CD443942.1|CD443942
EST:     GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|149103373|gb|EE288760.2|EE288760
EST:     GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|211253246|gb|FL003856.1|FL003856
EST:     GCTACAACGGGGAAGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAAGCTGGGA
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGA
EST: gi|21843169|gb|BQ703765.1|BQ703765
EST:     GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATA                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: gi|211029842|gb|FK948182.1|FK948182
EST:     CTATAACNGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG                         GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: CTACAAC-GGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 740

AGCCAACTACTACGGCTCCCTCACCCAGGCCTCCACCATCAGAGTCGGCAGCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACCTGGCCGACTCCATGACCAGGGCCAAGGTGCTGGATATTGACCTGCAGA


Block sizes: 43 (upstream exon), 48 (downstream exon)
Score: 35

AGCCAACTACTACGGCTCCCTCACCCAGGCCTCCACCATCAGAGTCGGCAGCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACCTGGCCGACTCCATGACCAGGGCCAAGGTGCTGGATATTGACCTGCAGA


Block sizes: 40 (upstream exon), 40 (downstream exon)
Score: 15

AGCCAACTACTACGGCTCCCTCACCCAGGCCTCCACCATCAGAGTCGGCAGCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACCTGGCCGACTCCATGACCAGGGCCAAGGTGCTGGATATTGACCTGCAGA


Block sizes: 44 (upstream exon), 48 (downstream exon)
Score: 199

AGCCAACTACTACGGCTCCCTCACCCAGGCCTCCACCATCAGAGTCGGCAGCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACCTGGCCGACTCCATGACCAGGGCCAAGGTGCTGGATATTGACCTGCAGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCCAACTACTACGGCTCCCTCACCCAGGCCTCCACCATCAGAGTCGGCAGCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctattatagacttgactaatactcttctttttactgaaaccaaacatacataacaaagcatattccgtaaggtgctagttgatgttataaaatga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataacaaa