1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AATCAACGAAAAGATCGGTGCTGCTGGTGTAGTCAGCCAGGAGTGCAAGACTGTTGTTTCTCAATACGGACAACAGATCCTAGATCTTCTGCTAGCTGAGgtttgtatgttccaaactatgttgcttttctggttgctggtttggtcaattgcttttggaggtaactcaacttgctatttggttattttgcag
species | Zea mays |
transcript | GRMZM2G153977_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GACAACAGATCCTAGATCTTCTGCTAGCTGAG ACGCAACCAGCGAAGATCTGTTCTCAGGTTGGCCTGTGCACTTTTGATGGCEST: gi|60400185|gb|DN232992.1|DN232992
genomic: GACAACAGATCCTAGATCTTCTGCTAGCTGAGgtttgtatgt ... tattttgcagACGCAACCAGCGAAGATCTGTTCTCAGGTTGGCCTGTGCACTTTTGATGGC
EST: CTGTTGTTTCTCAATACGGACAACAGATCCTAGATCTTCTGCTAGCTGAG ACGCAACCAGCGAAGATCTGTTCTCAGGTTGGCCTGTGCACTTTTGATGGCEST: gi|21331514|gb|BQ486895.1|BQ486895
genomic: CTGTTGTTTCTCAATACGGACAACAGATCCTAGATCTTCTGCTAGCTGAGgtttgtatgt ... tattttgcagACGCAACCAGCGAAGATCTGTTCTCAGGTTGGCCTGTGCACTTTTGATGGC
EST: CTGTTGTTTCTCAATACGGACAACAGATCCTAGATCTTCTGCTAGCTGAG ACGCAACCAGCGAAGATCTGTTCTCAGGTTGGCCTGTGCACTTTTGATGGCEST: gi|78120564|gb|DV538948.1|DV538948
genomic: CTGTTGTTTCTCAATACGGACAACAGATCCTAGATCTTCTGCTAGCTGAGgtttgtatgt ... tattttgcagACGCAACCAGCGAAGATCTGTTCTCAGGTTGGCCTGTGCACTTTTGATGGC
EST: TCCTAGATCTTCTGCTAGCTGAG ACGCAACCAGCGAAGATCTGTTCTCAGGTTGGCCTGTGCACTTTTGATGGCEST: gi|31627888|gb|CD526338.1|CD526338
genomic: TCCTAGATCTTCTGCTAGCTGAGgtttgtatgt ... tattttgcagACGCAACCAGCGAAGATCTGTTCTCAGGTTGGCCTGTGCACTTTTGATGGC
EST: CTGTTGTTTCTCAATACGGACAACAGATCCTAGATCTTCTGCTAGCTGAG ACGCAACCAGCGAAGATCTGTTCTCAGGTTGGCCTGTGCACTTTTGATGGCEST: gi|67015196|gb|CO443945.1|CO443945
genomic: CTGTTGTTTCTCAATACGGACAACAGATCCTAGATCTTCTGCTAGCTGAGgtttgtatgt ... tattttgcagACGCAACCAGCGAAGATCTGTTCTCAGGTTGGCCTGTGCACTTTTGATGGC
EST: CTGTTGTTTCTCAATACGGACAACAGATCCTAGATCTTCTGCTAGCTGAG ACGCAACCAGCGAAGATCTGTTCTCAGGTTGGCCTGTGCACTTTTGATGGC
genomic: CTGTTGTTTCTCAATACGGACAACAGATCCTAGATCTTCTGCTAGCTGAGgtttgtatgt ... tattttgcagACGCAACCAGCGAAGATCTGTTCTCAGGTTGGCCTGTGCACTTTTGATGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCAACGAAAAGATCGGTGCTGCTGGTGTAGTCAGCCAGGAGTGCAAGACTGTTGTTTCTCAATACGGACAACAGATCCTAGATCTTCTGCTAGCTGAGgtttgtatgttccaaactatgttgcttttctggttgctggtttggtcaattgcttttggaggtaactcaacttgctatttggttattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA