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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTAGGTTCTTTTACTGGGGGTTCTTTGGCAGATAAATTTGGGCGGACAAGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttgaactatttagttgtaacttgtaagtgtacactgttatcttttgtgaaactgacacacgggcatatgcag

Basic information

species Zea mays
transcript GRMZM2G153704_T07
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G153704_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g04190.2 (Oryza sativa), 5'ss of exon 5
CACTAGGTTCTTTTACTGGGGGTTCTTTGGCAGATAAATTTGGGCGGACAAGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgt-------tttgaactatttagttgtaacttgtaa-gtgtac------------------actgttatcttttgtgaaactgacacacgggc-atatgcag
||  ||||||||||||||| ||| |||| || || |||||||| || ||| | || ||||||||||||||| |||| || ||| ||||||||||| ||||||||||       || ||   |||  ||| ||||| | || ||  ||                  | ||| |||    |  || || ||||| |    || |||||
CAGCAGGTTCTTTTACTGGAGGTGCTTTAGCTGACAAATTTGGACGAACACGGACGTTCATCCTGGATGCAATCCCTCTCGCTGTAGGTGCATTCCTGAGgtgtgtctatagattcgattaattgtgttttaactaggaatgtacacttgcttaagaaaaccgctattgtcatccaacggaaacctaacacatgaaagatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211050167|gb|FL124868.1|FL124868
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
EST: gi|211138131|gb|FL231032.1|FL231032
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
EST: gi|211138132|gb|FL231033.1|FL231033
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTTGGCCGATTGCTTGCTG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATT-GGCCGATTGCTTGCTG