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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCCAGCTTGGACAACCAGCTACCGTTAAAGTTGCAGCCAACTTGATTAGGTTGCTAGCTTATCAGAACAAGgtatgttccatagcattccagcacgtactgttaaaacacgcttcacttttctcactgataagcacctggtgtcggaattttatgttgaactcttgtttagctatgaaaatgaatgtttggtattaatattcag

Basic information

species Zea mays
transcript GRMZM2G152775_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152775_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os06g04800.1 (Oryza sativa), 5'ss of exon 4
AATCCAGCTTGGACAACCAGCTACCGTTAAAGTTGCAGCCAACTTGATTAGGTTGCTAGCTTATCAGAACAAGgtatgtt--ccatagcattccagcacgta------ctgttaaaacacgct-tcacttttctcactgataagcacctggtgtcggaattttatgttgaactcttgtttagctatgaaaatgaatgtttggtattaatattcag
||| |||||||| ||||||||||| || ||||||||||||||||| ||||||||| | ||||||||||||||||||| ||  |  |||||||| |  |   |          ||| ||| |   | | || | || |||||          | ||  |  || || || | || |||| ||  |   | | ||  | |||   |  ||| |||||
AATTCAGCTTGGGCAACCAGCTACTGTGAAAGTTGCAGCCAACTTAATTAGGTTGTTGGCTTATCAGAACAAGgtatattttctgtagcattctacgatacaagaatttcactaatacatgagatgaattctttctctgattc--------tttcatacattgattttaagctattgtctaattgccatattggtttttt--caccaattttcag

upper sequence: GRMZM2G152775_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g53060.1 (Oryza sativa), 5'ss of exon 4
AATCCAGCTTGGACAACCAGCTACCGTTAAAGTTGCAGCCAACTTGATTAGGTTGCTAGCTTATCAGAACAAGgtatgtt--ccatagcattccagcacgta------ctgttaaaacacgc--ttcacttttctcactgataagca---cctggtgtcggaattttat-gttg-aactcttgtttagctatgaaaatgaatgtt-tggtattaatatt-cag----------------------------------
||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||| ||  | |||||||||    |   |      |  | |  ||| |   |  | || | || ||||||  |      |   ||     |||||| || | ||   ||  |  | ||    | |  | ||| | || ||| | |  ||                                   
AATTCAGCTTGGGCAGCCAGCTACCGTGAAAGTTGCAGCCAACTTAATTAGGTTGTTGGCTTATCAGAACAAGgtatattttctatagcattctgcgatccaataactccatgactacatgagatgaaattctttctctgatacacgattttttaagttattgttttattgtcgcaatggtttctctgatacacgattttaagttgttgttttattgtcgcaatggttttttttttaccattttttttatttttcag