Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGCCTGCTGAGTACAAAAGGTCCAGGTTGCCTAGGAGCCGCAGGACTGTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaatagggggtggacatattgtggtgtggaggtccaggttctgtaatttcgtagtcttatgaattacaactactgtatgcag

Basic information

species Zea mays
transcript GRMZM2G152552_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152552_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g33920.1 (Oryza sativa), 5'ss of exon 3
TGAGGCCTGCTGAGTACAAAAGGTCCAGGTTGCCTAGGAGCCGCAGGACTGTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaatagggggtggacatattgtggtgtggaggtccaggttctgtaatttcgtagtcttatgaattacaactactg-tatgcag
||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||| ||||||||||| |||||||||| ||| |||||||| |||| |||| |||  |  | || ||  ||  |||   |  | || | ||||||   | || ||||||| |  | |||||     | |||||
TGAGGCCTGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacataatgc-tagatattctgatgtgaaaactttcaagatctgta---ttgtggtcttattagctgcaactgtaactctgcag

upper sequence: GRMZM2G152552_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA01G05740.1 (Glycine max), 5'ss of exon 3
TGAGGCCTGCTGAGTACAAAAGGTCCAGGTTGCCTAGGAGCCGCAGGACTGTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagta--aatagggggtggacatat-tgtggtgtggaggtccaggttctgtaatttcgtagtcttatgaattacaactactgtatgcag
|||||||||| |||||||| ||||| ||||| || || | ||| |||||||| |||||| | |||||||||||  | ||||||| ||| || ||||||||||  ||   | |||    |  |||  | | |  | |       |   |  | |||||   |  |   ||  ||  |   | || ||     
TGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgttttactagacttttaacagctatatattataataactcgtatgatttaattgtttgcttacatttatctctggttctatag----

upper sequence: GRMZM2G152552_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT3G28900.1 (Arabidopsis thaliana), 5'ss of exon 3
TGAGGCCTGCTGAGTACAAAAGGTCCAGGTTGCCTAGGAGCCGCAGGACTGTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaatagggggtggacatattgtggtgtggaggtcc--aggttctgtaatttcgtagtcttatgaattacaactactgtatgcag
|||| |||||||||||||||||||| |||||| | |||| |   ||||| ||||| ||| | |||||||| || || |||||| |||||||||||||||||| |||  || |      ||| | ||      |||          ||  || || |    | |||||    || |  ||  |  |     
TGAGACCTGCTGAGTACAAAAGGTCAAGGTTGGCAAGGAACGAGAGGACAGTGAATCGTGCATATGGTGGTGTTCTATCTGGAGTTGCTGTTAGGGAGAGgtaagtgtattgtaa--agacctcttaaaaattggtttctttagagtattgcaact----aatcttactcttttct-ctgttccag----

upper sequence: GRMZM2G152552_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv01s0026g02410.t01 (Vitis vinifera), 5'ss of exon 3
TGAGGCCTGCTGAGTACAAAAGGTCCAGGTTGCCTAGGAGCCGCAGGACTGTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaatagggggtggacatattgtggtgtggaggtccaggttctgtaatttcgtagtcttatgaattacaactactgtatgcag--------------------------
| || ||||| || ||||| ||||| || || ||||||| ||| ||||||||||||||| ||||||| || ||  | ||||||  |||||| ||||| ||||  || |  |  |  |        |||   |||    | ||  |  | | || | | |   ||    || |    | ||| |                               
TAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAACCGTAGGACTGTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagcaaagttt-------ctgttcagtgctcattcatatcatttcatatggaaagttttaagatcaactttgctggacatgtctttattttttcaattggttttgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32908558|gb|CF013371.1|CF013371
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|60340593|gb|DN207566.1|DN207566
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|32939085|gb|CF043904.1|CF043904
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|33094263|gb|CF054257.1|CF054257
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|15208720|gb|BI430604.1|BI430604
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|211075783|gb|FL122622.1|FL122622
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|32937599|gb|CF042418.1|CF042418
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|33094473|gb|CF054467.1|CF054467
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|15499395|gb|BI595908.1|BI595908
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|32945005|gb|CF049824.1|CF049824
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGGAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|30031693|gb|CB833544.1|CB833544
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|9255232|gb|BE345700.1|BE345700
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCCTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|32940137|gb|CF044956.1|CF044956
EST:     GTGGACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|15056983|gb|BI360955.1|BI360955
EST:     ACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: ACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|32846789|gb|CD986470.1|CD986470
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|30031692|gb|CB833543.1|CB833543
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|16919391|gb|BM074168.1|BM074168
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|60352266|gb|DN219239.1|DN219239
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|32910557|gb|CF015369.1|CF015369
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|16919052|gb|BM074017.1|BM074017
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|15198797|gb|BI423490.1|BI423490
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|15427013|gb|BI542835.1|BI542835
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|211075786|gb|FL122625.1|FL122625
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|71770590|gb|DR968527.1|DR968527
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|32911317|gb|CF016129.1|CF016129
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|33094622|gb|CF054616.1|CF054616
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTCCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|211075787|gb|FL122626.1|FL122626
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|8930357|gb|BE225121.1|BE225121
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCCTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|32805280|gb|CD957516.1|CD957516
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|166639382|gb|EG309286.1|EG309286
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCCTTCTTGGTCGAGGAGCAAGAAGATTGTCAAGAAGGTCC
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCA-GAAGATTGTCAAGAAGGTCC
EST: gi|211075788|gb|FL122627.1|FL122627
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCCTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|32940891|gb|CF045710.1|CF045710
EST:     ACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: ACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|211075791|gb|FL122630.1|FL122630
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCCTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|211078527|gb|FL122635.1|FL122635
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|32857276|gb|CD996957.1|CD996957
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|45567828|gb|CK985766.1|CK985766
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCCTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|60342856|gb|DN209829.1|DN209829
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|32939901|gb|CF044720.1|CF044720
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|32848628|gb|CD988309.1|CD988309
EST:     ACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCTTTTTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: ACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|5566758|gb|AI881624.1|AI881624
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCCTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|211075784|gb|FL122623.1|FL122623
EST:     GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG                         AATCATTCGTGCCTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 325

TGAGGCCTGCTGAGTACAAAAGGTCCAGGTTGCCTAGGAGCCGCAGGACTGTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCTGAAAATACAAAAAACCAAGGACAAGACAGCTGCAAAGTAAATCTCCAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 346

TGAGGCCTGCTGAGTACAAAAGGTCCAGGTTGCCTAGGAGCCGCAGGACTGTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCTGAAAATACAAAAAACCAAGGACAAGACAGCTGCAAAGTAAATCTCCAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 338

TGAGGCCTGCTGAGTACAAAAGGTCCAGGTTGCCTAGGAGCCGCAGGACTGTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCTGAAAATACAAAAAACCAAGGACAAGACAGCTGCAAAGTAAATCTCCAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 253

TGAGGCCTGCTGAGTACAAAAGGTCCAGGTTGCCTAGGAGCCGCAGGACTGTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctgtatgcagAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCTGAAAATACAAAAAACCAAGGACAAGACAGCTGCAAAGTAAATCTCCAGG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAGGCCTGCTGAGTACAAAAGGTCCAGGTTGCCTAGGAGCCGCAGGACTGTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaatagggggtggacatattgtggtgtggaggtccaggttctgtaatttcgtagtcttatgaattacaactactgtatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT