1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CACCCCGTTTCAACTCAAGTACTGGACTCACCCTAAGGACGATCACTACGACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtatgttctcgaatatgagctcgtcagcgagacagcgacgacaagaagagctatgattattggagggagctatggttatttaaatccttctttttgtcgtggattatcatctgcaatattcaattcag
species | Zea mays |
transcript | GRMZM2G152477_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|32845008|gb|CD984689.1|CD984689
genomic: GGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|37426126|gb|CF650813.1|CF650813
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|32845140|gb|CD984821.1|CD984821
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|32844554|gb|CD984235.1|CD984235
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|78114010|gb|DV532399.1|DV532399
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|32844045|gb|CD983726.1|CD983726
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGTCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|37393857|gb|CF634195.1|CF634195
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|76012839|gb|DT940009.1|DT940009
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: AGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|32835913|gb|CD975591.1|CD975591
genomic: AGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|18162089|gb|BM331928.1|BM331928
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: CTGGAGAGGGGTGGCGCGCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
genomic: CTGGAGAGGGGTGGCGC-CTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACCCCGTTTCAACTCAAGTACTGGACTCACCCTAAGGACGATCACTACGACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtatgttctcgaatatgagctcgtcagcgagacagcgacgacaagaagagctatgattattggagggagctatggttatttaaatccttctttttgtcgtggattatcatctgcaatattcaattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG