ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

AACCATGACTACAGGGGTGACGCGCTCGCGCAGCTGAGCCCGGTCCTGCGGAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagatcgcgcgtgtttttttcttcgatctggattaaggaacagattaggcatgcgaaagctgtaacgtattacatatcattgccatccttctactag

Basic information

species	Zea mays
transcript	GRMZM2G152477_T01
intron #	3
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G152477_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g13540.1 (Oryza sativa), 5'ss of exon 3

AACCATGACTACAGGGGTGACGCGCTCGCGCAGCTGAGCCCGGTCCTGCGGAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaaga------tcgcgcgtgtttttttcttcgatctg--gattaaggaacagatta-ggcatgcgaa--agctgtaac---gtattacatatcattgccatccttctactag
|| ||||||||||||||||| | ||| || ||||| ||||| ||| |||| |||||||||   || ||||||||||| |  || ||| | || || ||||||   || |        |    || ||  | ||| ||| ||  |||  ||      | |    | ||| ||  | |  ||||   |||| |  | ||||   | |  || |   ||
AATCATGACTACAGGGGTGATGTGCTAGCACAGCTTAGCCCAGTCTTGCGAAAGATCGACCAGCGATTCATTTGCATGAGGTCGTTCATTGTTAATGCAGgtaggaaaaaaaatgcagtatttggttactacttggatatgatgatagagttctgaactgtaacgtgcaaaacaacgctaactttgtatgatctgtcatcaacctttttttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|101397948|gb|EB820851.1|EB820851

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT

EST: gi|149107111|gb|EE189001.2|EE189001

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT

EST: gi|50335510|gb|CO530636.1|CO530636

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT

EST: gi|71767234|gb|DR965171.1|DR965171

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT

EST: gi|148973087|gb|EE024151.2|EE024151

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCCGTTTCAACTCAAGTAC
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCC-GTTTCAACTCAAGTAC

EST: gi|149072306|gb|EE160571.2|EE160571

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT

EST: gi|76289549|gb|DV029117.1|DV029117

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT

EST: gi|89247687|gb|DY619473.1|DY619473

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT

EST: gi|78087669|gb|DV516062.1|DV516062

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT

EST: gi|32844410|gb|CD984091.1|CD984091

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGT

EST: gi|74239383|gb|DT647297.1|DT647297

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT

EST: gi|37426126|gb|CF650813.1|CF650813

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT

EST: gi|71432358|gb|DR813408.1|DR813408

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT

EST: gi|76012119|gb|DT939289.1|DT939289

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT

EST: gi|148943407|gb|EC888466.2|EC888466

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT

EST: gi|32845060|gb|CD984741.1|CD984741

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTA
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTA

EST: gi|71767917|gb|DR965854.1|DR965854

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT

EST: gi|76012840|gb|DT940010.1|DT940010

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT

EST: gi|19821796|gb|BQ047820.1|BQ047820

EST:     GAAGATCGACAGCCGGTTCATCTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT

EST: gi|37393857|gb|CF634195.1|CF634195

EST:     TCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: TCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT

EST: gi|76280616|gb|DV020184.1|DV020184

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT

EST: gi|78114011|gb|DV532400.1|DV532400

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT

EST: gi|78105515|gb|DV523933.1|DV523933

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT

EST: gi|74245680|gb|DT653594.1|DT653594

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTC
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTC

EST: gi|71433301|gb|DR814351.1|DR814351

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT

EST: gi|149014265|gb|EE043835.2|EE043835

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT

EST: gi|149039483|gb|EE046624.2|EE046624

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT

EST: gi|89758274|gb|DY687518.1|DY687518

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT

EST: gi|17970297|gb|BM277060.1|BM277060

EST:     GAAGATCGACAGCCGGTTCATCTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACC
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACC

EST: gi|148986094|gb|EE029903.2|EE029903

EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 109

AACCATGACTACAGGGGTGACGCGCTCGCGCAGCTGAGCCCGGTCCTGCGGAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTGGACTCACCCTAAGGACGATCACTACGACTGGAGAGGGGTGGCGCCTCG

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 359

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 348