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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTACTGGTGAACCTGTGCCACCGAAGTTCTCTCATATGCTTAAGTTTGGTGATGTCTCATATAACCTGTACAGCCACAGTTTTTTGCATCTTGGTCTGgtgagttgtgggcataaatattagttgtccttgtccattcaaacattatcgattgtccatgttctcctaaattgccttatcacaagaaaagtatgttgccacgcctgcaccttagcaatgatccactttatggttaattaagtgctcctttgctataatcttctatgtgctgactgttctatctcattttgtgtgcag

Basic information

species Zea mays
transcript GRMZM2G152457_T05
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152457_T04 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g33850.2 (Oryza sativa), 5'ss of exon 3
TGTTACTGGTGAACCTGTGCCACCGAAGTTCTCTCATATGCTTAAGTTTGGTGATGTCTCATATAACCTGTACAGCCACAGTTTTTTGCATCTTGGTCTGgtgagttgtgggcataaatattagt-tgtccttgtccattcaaacattatcgattgtccatgttctcctaaattgccttatcacaagaaaagtatgttgccacgcctgcaccttagcaatgatccactttatggttaattaagtgctcctttgctataatcttctatgtgctgactgttctatctcattttgtgtgcag
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TGTTACGGACAAACCTTTGCCTCCAGAGTTCTCTCATACTCTGAAGTTCGGTGATGCCACATATAATCTGTACAGTCACAGCTTTCTACAACTTGGTCAGgtgatttgtgcaaatatttattattgtgtatttaactgtt-acctgtgatgagctatgatcattatcttagtttcatgtggcatcaataaacttttgggtaaag---gtatgtta-caatatcttgcttgtttcctgtgcag---------------------------------------------------------