1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AATCATGATTACAGGGGCAATGCGCTCGCACAGCTTAGCCCAGTCTTGAGGAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAGgtatataacagaaaaacgtaattcatttgaacctggagaggattactgatctcctaattaaaactgcaacaaggcaagcaaggctgaaatgtgtgtggcattttcgttcctaatctttgccag
species | Zea mays |
transcript | GRMZM2G152447_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAG AACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATTEST: gi|50328960|gb|CO524086.1|CO524086
genomic: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAGgtatataaca ... tctttgccagAACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATT
EST: ACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAG AACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATTEST: gi|211512568|gb|FL110029.1|FL110029
genomic: ACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAGgtatataaca ... tctttgccagAACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATT
EST: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAG AACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATTEST: gi|71436322|gb|DR817372.1|DR817372
genomic: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAGgtatataaca ... tctttgccagAACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATT
EST: ATTCATTTGCATGAGATTGTTCTATCGTTAACGCAG AACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATTEST: gi|18169298|gb|BM339138.1|BM339138
genomic: ATTCATTTGCATGAGATCGTTC-ATCGTTAACGCAGgtatataaca ... tctttgccagAACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATT
EST: GACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAG AACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATTEST: gi|24934165|gb|CA452383.1|CA452383
genomic: GACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAGgtatataaca ... tctttgccagAACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATT
EST: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAG AACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATTEST: gi|149107456|gb|EE189334.2|EE189334
genomic: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAGgtatataaca ... tctttgccagAACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATT
EST: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAG AACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATTEST: gi|78110600|gb|DV529008.1|DV529008
genomic: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAGgtatataaca ... tctttgccagAACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATT
EST: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAG AACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATTEST: gi|91055272|gb|EB165690.1|EB165690
genomic: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAGgtatataaca ... tctttgccagAACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATT
EST: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAG AACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATTEST: gi|91876187|gb|EB406144.1|EB406144
genomic: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAGgtatataaca ... tctttgccagAACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATT
EST: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAG AACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATTEST: gi|78109968|gb|DV528383.1|DV528383
genomic: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAGgtatataaca ... tctttgccagAACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATT
EST: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAG AACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATTEST: gi|78109969|gb|DV528384.1|DV528384
genomic: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAGgtatataaca ... tctttgccagAACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATT
EST: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAG AACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATTEST: gi|78086366|gb|DV514759.1|DV514759
genomic: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAGgtatataaca ... tctttgccagAACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATT
EST: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAG AACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATTEST: gi|148986503|gb|EE030253.2|EE030253
genomic: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAGgtatataaca ... tctttgccagAACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATT
EST: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAG AACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATTEST: gi|76288593|gb|DV028161.1|DV028161
genomic: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAGgtatataaca ... tctttgccagAACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATT
EST: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAG AACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATTEST: gi|91872645|gb|EB402602.1|EB402602
genomic: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAGgtatataaca ... tctttgccagAACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATT
EST: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAG AACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATTEST: gi|211512569|gb|FL110030.1|FL110030
genomic: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAGgtatataaca ... tctttgccagAACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATT
EST: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAG AACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATTEST: gi|91054359|gb|EB164777.1|EB164777
genomic: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAGgtatataaca ... tctttgccagAACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATT
EST: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAG AACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATTEST: gi|78110599|gb|DV529007.1|DV529007
genomic: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAGgtatataaca ... tctttgccagAACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATT
EST: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAG AACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATTEST: gi|71312265|gb|DR792656.1|DR792656
genomic: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAGgtatataaca ... tctttgccagAACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATT
EST: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAG AACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATTEST: gi|101394597|gb|EB819233.1|EB819233
genomic: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAGgtatataaca ... tctttgccagAACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATT
EST: CGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAG AACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATTEST: gi|56461959|gb|CK986257.1|CK986257
genomic: CGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAGgtatataaca ... tctttgccagAACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATT
EST: GAGGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAG AACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATT
genomic: GAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAGgtatataaca ... tctttgccagAACTTGTGGACTTCTTCTTTGTCGACACCACTCCGTTCCAACTGGAGTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCATGATTACAGGGGCAATGCGCTCGCACAGCTTAGCCCAGTCTTGAGGAAGATCGACGACCGATTCATTTGCATGAGATCGTTCATCGTTAACGCAGgtatataacagaaaaacgtaattcatttgaacctggagaggattactgatctcctaattaaaactgcaacaaggcaagcaaggctgaaatgtgtgtggcattttcgttcctaatctttgccag
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