Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAGATGACCCAGATCATGTTCGAGACCTTCAACACCCCGGCTATGTACGTCGCCATCCAGGCCGTGCTCTCTCTGTATGCCAGTGGCCGTACCACAGgtgagctgattccgttctctgcttaacaatttccaaatccgatttgctcctgcagtccgttatctctaatatctgtggcttcccctctctcag

Basic information

species Zea mays
transcript GRMZM2G152328_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152328_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g50885.1 (Oryza sativa), 5'ss of exon 2
GAGAAGATGACCCAGATCATGTTCGAGACCTTCAACACCCCGGCTATGTACGTCGCCATCCAGGCCGTGCTCTCTCTGTATGCCAGTGGCCGTACCACAGgtgagctgattccgttctctgcttaacaatt-tccaaatccgatttgctcctgcagtccgttatctctaatatctgtggcttcccctctctcag-------
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||  ||||    ||   || ||    | |    ||    |||  |  ||   | |   || |  |  |  | | | |   |     |||        
GAGAAGATGACCCAGATCATGTTTGAGACCTTCAACACCCCTGCTATGTACGTCGCCATCCAGGCCGTCCTCTCTCTGTATGCCAGTGGTCGTACCACAGgtgagcacattcgacactgaactaaaaggctgtgaggatgaattttaattttgacattcac-atgtagatgagatttagttctgcaatcttcaattgtcat

upper sequence: GRMZM2G152328_T02 (Zea mays), 5'ss of exon 2
lower sequence: EDO98923 (Chlamydomonas reinhardtii), 5'ss of exon 5
GAGAAGATGACCCAGATCATGTTCGAGACCTTCAACACCCCGGCTATGTACGTCGCCATCCAGGCCGT----GCTCTCTCTGTATGCCAGTGGCCGTACCACAGgtgagc-tgattccgttctctgcttaacaatttccaaatccgatttgctcctgcagtccgttatctctaatatctgtggcttcccctctctcag
               |||||||||||||||||||||   ||||| |||||||| || |||||||        |      | |      |  |||||   ||  |  |  |  |    |   |   ||   ||| |     |  || |  | |  | || ||| |                                  
---------------ATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAGgtgagagaggtcgagacagcggagtaacggccgcggcatcgcggcacgcggcagcagcccgagccggacagtaaggcaggccca--tacaacagcggtcggc---------------------------------

upper sequence: GRMZM2G152328_T02 (Zea mays), 5'ss of exon 2
lower sequence: PP1S372_48V6.1 (Physcomitrella patens), 5'ss of exon 2
GAGAAGATGACCCAGATCATGTTCGAGACCTTCAACACCCCGGCTATGTACGTCGCCATCCAGGCCGTGCTCTCTCTGTATGCCAGTGGCCGTACCACAGgtgagctgattccgttctctgcttaacaatttccaaatccgatttgctcctgcagtccg---ttatctctaatatctgtggcttcccctct--ctcag
||||||||||| ||||||||||||||||| ||||||   ||||| |||||||| || |||||||| ||||| || ||||| || || || || || || ||||||  |     |     ||                   | |  | |   |  ||  |   | ||    || |  ||||||    | |      |||
GAGAAGATGACGCAGATCATGTTCGAGACGTTCAACGTGCCGGCGATGTACGTGGCGATCCAGGCGGTGCTGTCGCTGTACGCGAGCGGGCGAACGACGGgtgagtggggagtgagtggtgagggggtggggatggtggtggtaggatgtggaggtgggaggtgattgagaacagatgtggcggtgcgtggaatgcag

upper sequence: GRMZM2G152328_T02 (Zea mays), 5'ss of exon 2
lower sequence: PP1S337_21V6.2 (Physcomitrella patens), 5'ss of exon 4
GAGAAGATGACCCAGATCATGTTCGAGACCTTCAACACCCCGGCTATGTACGTCGCCATCCAGGCCGTGCTCTCTCTGTATGCCAGTGGCCGTACCACAGgtgagctgattccgttctctgcttaacaatttccaaatccgatttgctcctgcagtccgtta---tctcta-atatctgtggcttcccctctctcag-------------------------------------------------------------
||||||||||| ||||||||||||||||| ||||||   ||||| |||||||| ||||| ||||| ||||| || || ||||||||||| || || || |||||| ||||          |       | | |   ||  |  ||| |   | |    ||     | | |  | |  || ||  |      |   |                                                              
GAGAAGATGACGCAGATCATGTTCGAGACGTTCAACGTGCCGGCGATGTACGTGGCCATTCAGGCAGTGCTGTCACTATATGCCAGTGGACGAACGACCGgtgag-tgatgggagaaggggtgaggtgaatgcagcatgtgcgttggttgcgaaagtggtggaggtgtgtggagaggtggggtgtttgacatgggaaggtttgtgggtcggggtaagaaactgagagcagttgtggtgatgaatgcaatgcaatgcag

upper sequence: GRMZM2G152328_T02 (Zea mays), 5'ss of exon 2
lower sequence: EFJ17401 (Selaginella moellendorffii), 5'ss of exon 2
GAGAAGATGACCCAGATCATGTTCGAGACCTTCAACACCCCGGCTATGTACGTCGCCATCCAGGCCGTGCTCTCTCTGTATGCCAGTGGCCGTACCACAGgt--gagctgattccgttctctgcttaacaatttccaaat--ccgatt--tgctcctgcagtccgttatctctaatatctgtg--gcttcccctctctcag-------------------------------------------------
|||||||||||||||||||||||||||||||||||   |||||| |||||||| || ||||| || || || || || || || ||||| || || || |||  |   |  ||   | |  |||||        | | ||    |||   || | ||    | ||||   |   |||    ||  |||||   |   |                                                    
GAGAAGATGACCCAGATCATGTTCGAGACCTTCAATGTCCCGGCCATGTACGTGGCGATCCAAGCAGTCCTTTCACTCTACGCGAGTGGACGCACTACCGgtatggagtttttttatcccttgcttgttctagacaagatggttgatgcgtgtttcttttcttcgttgcttgcgatagacatgatgcttcaagttggttctacttttgtttttccctctaacacgttgtatgatcgtggtttgtgatcag

upper sequence: GRMZM2G152328_T02 (Zea mays), 5'ss of exon 2
lower sequence: EFJ35077 (Selaginella moellendorffii), 5'ss of exon 2
GAGAAGATGACCCAGATCATGTTCGAGACCTTCAACACCCCGGCTATGTACGTCGCCATCCAGGCCGTGCTCTCTCTGTATGCCAGTGGCCGTACCACAGgt---gagctgattccgttctctgcttaacaatttccaaat--ccgatt--tgctcctgcagtccgttatctctaatatctgtg--gcttcccctctctcag--------------------------------------------------
|||||||||||||||||||||||||||||||||||   |||||| |||||||| || ||||| || || || || || || || ||||| || || || |||   ||| |  ||   | || |||||        | | ||    |||   || | ||    | ||||   |   |||    ||  |||||   |   |                                                     
GAGAAGATGACCCAGATCATGTTCGAGACCTTCAATGTCCCGGCCATGTACGTGGCAATCCAAGCAGTCCTTTCACTCTACGCGAGTGGACGCACTACCGgtatggagttttttttttcctttgcttgttctagacaagatggttgatgcgtgtttcttttcttcgttgcttgcgatagacatgatgcttcaagttggttctacttttttttcttctctctaacacgttgtatgatcgtggtttgtgatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211157728|gb|FL360808.1|FL360808
EST:     CGTCGCCATCCAGGCCGTGCTCTCTCTGTATGCCAGTGGCCGTACCACAG                         GTATCGTGCTCGACTCG
genomic: CGTCGCCATCCAGGCCGTGCTCTCTCTGTATGCCAGTGGCCGTACCACAGgtgagctgat ... cctctctcagGTATCGTGCTCGACTCG
EST: gi|6918758|gb|AW400288.1|AW400288
EST:     CGTCGCCATCCAGGCCGTGCTCTCTCTGTATGCCAGTGGCCGTACCACAG                         GTATCGTGCTCGACTCGGGAGATGGTGTGAGCCACACCGTCCCCATCTACG
genomic: CGTCGCCATCCAGGCCGTGCTCTCTCTGTATGCCAGTGGCCGTACCACAGgtgagctgat ... cctctctcagGTATCGTGCTCGACTCGGGAGATGGTGTGAGCCACACCGTCCCCATCTACG
EST: gi|211077505|gb|FL307130.1|FL307130
EST:     CGTCGCCATCCAGGCCGTGCTCTCTCTGTATGCCAGTGGCCGTACCACAG                         GTATCGTGCTCGACTCGGGAGATGGTGTGAGCCACACCGTCCCCATCTACG
genomic: CGTCGCCATCCAGGCCGTGCTCTCTCTGTATGCCAGTGGCCGTACCACAGgtgagctgat ... cctctctcagGTATCGTGCTCGACTCGGGAGATGGTGTGAGCCACACCGTCCCCATCTACG
EST: gi|7145305|gb|AW506786.1|AW506786
EST:     CGTCGCCATCCAGGCCGTGCTCTCTCTGTATGCCAGTGGCCGTACCACAG                         GTATCGTGCTCGACTCGGGAGATGGTGTGAGCCACACCGTCCCCATCTACG
genomic: CGTCGCCATCCAGGCCGTGCTCTCTCTGTATGCCAGTGGCCGTACCACAGgtgagctgat ... cctctctcagGTATCGTGCTCGACTCGGGAGATGGTGTGAGCCACACCGTCCCCATCTACG
EST: gi|6095303|gb|AW119970.1|AW119970
EST:     GGCCGTACCACAG                         GTATCGTGCTCGACTCGGGAGATGGTGTGAGCCACACCGTCCCCATCTACG
genomic: GGCCGTACCACAGgtgagctgat ... cctctctcagGTATCGTGCTCGACTCGGGAGATGGTGTGAGCCACACCGTCCCCATCTACG
EST: gi|67017533|gb|CO446282.1|CO446282
EST:     CGTCGCCATCCAGGCCGTGCTCTCTCTGTATGCCAGTGGCCGTACCACAG                         GTATCGTGCTCGACTCGGGAGATGGTGTGAGCCACACCGTCCCCATCTACG
genomic: CGTCGCCATCCAGGCCGTGCTCTCTCTGTATGCCAGTGGCCGTACCACAGgtgagctgat ... cctctctcagGTATCGTGCTCGACTCGGGAGATGGTGTGAGCCACACCGTCCCCATCTACG
EST: gi|211520844|gb|FL034051.1|FL034051
EST:     CGTCGCCATCCAGGCCGTGCTCTCTCTGTATGCCAGTGGCCGTACCACAG                         GTATCGTGCTCGACTCGGGAGATGGTGTGAGCCACA-CGTCCCCATCTACG
genomic: CGTCGCCATCCAGGCCGTGCTCTCTCTGTATGCCAGTGGCCGTACCACAGgtgagctgat ... cctctctcagGTATCGTGCTCGACTCGGGAGATGGTGTGAGCCACACCGTCCCCATCTACG
EST: gi|14242811|gb|BG840625.2|BG840625
EST:     CGTCGCCATCCAGGCCGTGCTCTCTCTGTATGCCAGTGGCCGTACCACAG                         GTATCGTGCTCGACTCGGGAGATGGTGTGAGCCACACCGTNCCCATCTACG
genomic: CGTCGCCATCCAGGCCGTGCTCTCTCTGTATGCCAGTGGCCGTACCACAGgtgagctgat ... cctctctcagGTATCGTGCTCGACTCGGGAGATGGTGTGAGCCACACCGTCCCCATCTACG
EST: gi|78180780|gb|DV551153.1|DV551153
EST:     CGTCGCCATCCAGGCCGTGCTCTCTCTGTATGCCAGTGGCCGTACCACAG                         GTATCGTGCTCGACTCGGGAGATGGTGTGAGCCACACCGTCCCCATCTACG
genomic: CGTCGCCATCCAGGCCGTGCTCTCTCTGTATGCCAGTGGCCGTACCACAGgtgagctgat ... cctctctcagGTATCGTGCTCGACTCGGGAGATGGTGTGAGCCACACCGTCCCCATCTACG