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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACGACGTGTTCGCCATCGTCAACGCCGCGCCGGCCATCTCCCTCCTCGCCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTGCTTCGGCGCGgtaagctagctagctagccacggactgtgcctggttagtttagttagttggttggtcggatgacccacctctctcagcggtggtgcctgcctgcctgtcagccacgggggatccgactgtgatctcaccctccacgtgtcttcatgtcacag

Basic information

species Zea mays
transcript GRMZM2G152135_T04
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152135_T06 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g48880.1 (Oryza sativa), 5'ss of exon 3
CAACGACGTGTTCGCCATCGTCAACGCCGCGCCGGCCATCTCCCTCCTCGCCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTGCTTCGGCGCGgtaagctagctagctagccacggactgtgcctggttagtttagttagttggttggtcggatgacccacctctctcagcggtggtgcctgcctgcctgtcagccacgggggatccgactgtgatctcaccctccacgtgtcttcatgtcacag
|||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||   | |||   |  | |                                  |||  ||  | | |||||   ||| |  |  |||  ||||||||      |  |||| | || ||||| |||  |||||||||    | | ||||
CAACGACGTGTTCGCCATCACCAACGCCGTGCCGGCCATCTCCCTCCTCGCCTACGGCTTCTTCCACCGGGGCATCGTCCCCGGCCTCTGCTTCGGCGCGgtaagc---ccagcgccctgcag----------------------------------ggagcacgtaacgctctctctggtcggccgggcccacctgtcag-----agccatccaattgggatctgacctgccacgtgtccgtttcttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211378788|gb|FL471300.1|FL471300
EST:     CCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTYTGCTTCGGCGCG                         GGCCTGGGGATTACGCTGTTCGGCATGGCCTACATGTTCGTCCACGACGGC
genomic: CCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTGCTTCGGCGCGgtaagctagc ... catgtcacagGGCCTGGGGATTACGCTGTTCGGCATGGCCTACATGTTCGTCCACGACGGC
EST: gi|211485805|gb|FL428178.1|FL428178
EST:     CCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTGCTTCGGCGCG                         GGCCTGGGGATTACGCTGTTCGGCATGGCCTACATGTTCGTCCACGACGGC
genomic: CCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTGCTTCGGCGCGgtaagctagc ... catgtcacagGGCCTGGGGATTACGCTGTTCGGCATGGCCTACATGTTCGTCCACGACGGC
EST: gi|211062532|gb|FL481127.1|FL481127
EST:     CCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTGCTTCGGCGCG                         GGCCTGGGGATTACGCTGTTCGGCATGGCCTACATGTTCGTCCACGACGGC
genomic: CCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTGCTTCGGCGCGgtaagctagc ... catgtcacagGGCCTGGGGATTACGCTGTTCGGCATGGCCTACATGTTCGTCCACGACGGC
EST: gi|211081393|gb|FL128737.1|FL128737
EST:     CCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTGCTTCGGCGCG                         GGCCTGGGGATTACGCTGTTCGGCATGGCCTACATGTTCGTCCACGACGGC
genomic: CCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTGCTTCGGCGCGgtaagctagc ... catgtcacagGGCCTGGGGATTACGCTGTTCGGCATGGCCTACATGTTCGTCCACGACGGC
EST: gi|211200344|gb|FL437129.1|FL437129
EST:     CCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTGCTTCGGCGCG                         GGCCTGGGGATTACGCTGTTCGGCATGGCCTACATGTTCGTCCACGACGGC
genomic: CCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTGCTTCGGCGCGgtaagctagc ... catgtcacagGGCCTGGGGATTACGCTGTTCGGCATGGCCTACATGTTCGTCCACGACGGC
EST: gi|37392032|gb|CF633262.1|CF633262
EST:     CCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTGCTTCGGCGCG                         GGCCTGGGGATTACGCTGTTCGGCATGGCCTACATGTTCGTCCACGACGGC
genomic: CCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTGCTTCGGCGCGgtaagctagc ... catgtcacagGGCCTGGGGATTACGCTGTTCGGCATGGCCTACATGTTCGTCCACGACGGC
EST: gi|149107956|gb|EE292313.2|EE292313
EST:     CCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTGCTTCGGCGCG                         GGCCTGGGGATTACGCTGTTCGGCATGGCCTACATGTTCGTCCACGACGGC
genomic: CCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTGCTTCGGCGCGgtaagctagc ... catgtcacagGGCCTGGGGATTACGCTGTTCGGCATGGCCTACATGTTCGTCCACGACGGC
EST: gi|211070680|gb|FL369853.1|FL369853
EST:     CCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTGCTTCGGCGCG                         GGCCTGGGGATTACGCTGTTCGGCATGGCCTACATGTTCGTCCACGACGGC
genomic: CCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTGCTTCGGCGCGgtaagctagc ... catgtcacagGGCCTGGGGATTACGCTGTTCGGCATGGCCTACATGTTCGTCCACGACGGC
EST: gi|211131936|gb|FL382998.1|FL382998
EST:     CCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTGCTTCGGCGCG                         GGCCKGGGGATTACGCTGTTCGGCATGGCCTACATGTTCGTCCACGACGGC
genomic: CCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTGCTTCGGCGCGgtaagctagc ... catgtcacagGGCCTGGGGATTACGCTGTTCGGCATGGCCTACATGTTCGTCCACGACGGC
EST: gi|60342760|gb|DN209733.1|DN209733
EST:     CCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTGCTTCGGCGCG                         GGCCTGGGGATTACGCTGTTCGGCATGGCCTACATGTTCGTCCACGACGGC
genomic: CCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTGCTTCGGCGCGgtaagctagc ... catgtcacagGGCCTGGGGATTACGCTGTTCGGCATGGCCTACATGTTCGTCCACGACGGC