1 5' 3' | 2 5' 3' | 3 5' 3' |
GCGGCGCATGCGGGTGGCCTTCACCTGCAACGTGTGCGGGCAGCGTACGACCAGGGCCATCAATCCTCATGCCTACACTGATGGAACTGTGTTTGTTCAGgtatggactatgtgattagtgtatccaatgcgttaataagagtcaagttaagctgatacttgccctgcctttagttatgcgtattgactgctgcttctgt...
species | Zea mays |
transcript | GRMZM2G152056_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGGGCCATCAATCCTCATGCCTACCCTGATGGAAACTGTGTTTTGTTCAG TGCTGCGGTTGCAATGTGTTCCAAAAGTTGGEST: gi|18178629|gb|BM379833.1|BM379833
genomic: AGGGCCATCAATCCTCATGCCTACACTGATGGAA-CTGTGTTT-GTTCAGgtatggacta ... actgttgcagTGCTGCGGTTGCAATGTGTTCCATAAGTTGG
EST: CCAGGGCCATCAATCCTCATGCCTACACTGATGGAACTGTGTTTGTTCAG TGCTGCGGTTGCAATGTGTTCCATAAGTTGGTCGACAACCTGAACCTGTTTEST: gi|32844105|gb|CD983786.1|CD983786
genomic: CCAGGGCCATCAATCCTCATGCCTACACTGATGGAACTGTGTTTGTTCAGgtatggacta ... actgttgcagTGCTGCGGTTGCAATGTGTTCCATAAGTTGGTCGACAACCTGAACCTGTTT
EST: CCAGGGCCATCAATCCTCATGCCTACACTGATGGAACTGTGTTTGTTCAG TGCTGCGGTTGCAATGTGTTCCATAAGTTGGTCGACAACCTGAACCTGTTTEST: gi|211308770|gb|FL253754.1|FL253754
genomic: CCAGGGCCATCAATCCTCATGCCTACACTGATGGAACTGTGTTTGTTCAGgtatggacta ... actgttgcagTGCTGCGGTTGCAATGTGTTCCATAAGTTGGTCGACAACCTGAACCTGTTT
EST: CCAGGGCCATCAATCCTCATGCCTACACTGATGGAACTGTGTTTGTTCAG TGCTGCGGTTGCAATGTGTTCCATAAGT-GGTCGACAACCTGAACCTGTTTEST: gi|18178294|gb|BM379504.1|BM379504
genomic: CCAGGGCCATCAATCCTCATGCCTACACTGATGGAACTGTGTTTGTTCAGgtatggacta ... actgttgcagTGCTGCGGTTGCAATGTGTTCCATAAGTTGGTCGACAACCTGAACCTGTTT
EST: CCAGGGCCATCAATCCTCATGCCTACACTGATGGAACTGTGTTTGTTCAG TGCTGCGGTTGCAATGTGTTCCATAAGTTGGTCGACAACCTGAACCTGTTTEST: gi|211131519|gb|FL443438.1|FL443438
genomic: CCAGGGCCATCAATCCTCATGCCTACACTGATGGAACTGTGTTTGTTCAGgtatggacta ... actgttgcagTGCTGCGGTTGCAATGTGTTCCATAAGTTGGTCGACAACCTGAACCTGTTT
EST: CCAGGGCCATCAATCCTCATGCCTACACTGATGGAACTGTGTTTGTTCAG TGCTGCGGTTGCAATGTGTTCCATAAGTTGGTCGACAACCTGAACCTGTTTEST: gi|211306744|gb|FL253741.1|FL253741
genomic: CCAGGGCCATCAATCCTCATGCCTACACTGATGGAACTGTGTTTGTTCAGgtatggacta ... actgttgcagTGCTGCGGTTGCAATGTGTTCCATAAGTTGGTCGACAACCTGAACCTGTTT
EST: CCAGGGCCATCAATCCTCATGCCTACACTGATGGAACTGTGTTTGTTCAG TGCTGCGGTTGCAATGTGEST: gi|211143970|gb|FL467014.1|FL467014
genomic: CCAGGGCCATCAATCCTCATGCCTACACTGATGGAACTGTGTTTGTTCAGgtatggacta ... actgttgcagTGCTGCGGTTGCAATGTG
EST: CCAGGGCCATCAATCCTCATGCCTACACTGATGGAACTGTGTTTGTTCAG TGCTGCGGTTGCAATGTGTTCCATAAGTTGGTCGACAACCTGAACCTGTTTEST: gi|211306745|gb|FL253742.1|FL253742
genomic: CCAGGGCCATCAATCCTCATGCCTACACTGATGGAACTGTGTTTGTTCAGgtatggacta ... actgttgcagTGCTGCGGTTGCAATGTGTTCCATAAGTTGGTCGACAACCTGAACCTGTTT
EST: CCAGGGCCATCAATCCTCATGCCTACACTGATGGAACTGTGTTTGTTCAG TGCTGCGGTTGCAATGTGTTCCATAAGTYGGTCGACAACCTGAACCTGTTTEST: gi|211306750|gb|FL253747.1|FL253747
genomic: CCAGGGCCATCAATCCTCATGCCTACACTGATGGAACTGTGTTTGTTCAGgtatggacta ... actgttgcagTGCTGCGGTTGCAATGTGTTCCATAAGTTGGTCGACAACCTGAACCTGTTT
EST: CCAGGGCCATCAATCCTCATGCCTACACTGATGGAACTGTGTTTGTTCAG TGCTGCGGTTGCAATGTGTTCCATAAG
genomic: CCAGGGCCATCAATCCTCATGCCTACACTGATGGAACTGTGTTTGTTCAGgtatggacta ... actgttgcagTGCTGCGGTTGCAATGTGTTCCATAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGCGCATGCGGGTGGCCTTCACCTGCAACGTGTGCGGGCAGCGTACGACCAGGGCCATCAATCCTCATGCCTACACTGATGGAACTGTGTTTGTTCAGgtatggactatgtgattagtgtatccaatgcgttaataagagtcaagttaagctgatacttgccctgcctttagttatgcgtattgactgctgcttctgt
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