Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACAgtgagctatttaattgctctttatctctattaattcctgttgcttatgcgctacacaatgcaaaatcaacttgatagtatctgttgcaagttagaattaa...

Basic information

species Zea mays
transcript GRMZM2G151863_T04
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151863_T04 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os11g28300.1 (Oryza sativa), 5'ss of exon 4
GATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACAgtgagctatttaattgctctttatctc---tattaattcctgttgcttatgcgctacacaatgc--aaaatcaacttgatagtatctgttgcaagttagaattaa
 ||||||||||| || || || ||||| ||||| ||||| |||||||||||||||||||| ||  |||||||||| ||||| ||||| || |||||||| |||||||  |  |   |  || || ||   |||    |||  |   | |  |     |  ||||  | | |  ||||| |||     |||| || ||  |     
-ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACGgtgagctcctcgagatcaattcatttcgtttatcctatccaatgagtaaaacttagtatcatgcttatacttgacttgttagataaagttgtaatttgta-----

upper sequence: GRMZM2G151863_T04 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA18G47670.1 (Glycine max), 5'ss of exon 4
GATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACAgtgagc----tatttaattgctctttatctctattaattcc----tgttgcttatgcgctacacaatgca------aaatcaacttgatagtatctgttgca-agttagaattaa---------------------------------------------------------------------
 ||||| |||||||| || || || || || || ||||| ||||| ||||| ||||||||||| ||||||||||| ||   ||| ||   | | |||||||| ||      ||   ||   | |||   | || || |||     ||||| || | |  ||    ||| |         |     |||| | ||   ||||  |  || |    |                                                                     
-ATTGGGGATGAGACGTTTATAATAGCAGCTCTTATGGCTATGCGTCACCCTAAGTCAATTGTCTTGTCTGGTGCTCTCAGTGCTCTGATTATAATGACAgtaagtgcaacatgggatgcatttttggttttaatatttctgcattgttgtttct-cattattggatgtactttttgtgttgttgtgatggaatggtttgcgcaactacagagcactatttctgggtgctctaacttttcatattaatgttatcaggattaaagttactgtacgtgtcaattag

upper sequence: GRMZM2G151863_T04 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA09G38640.1 (Glycine max), 5'ss of exon 4
GATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACAgtgagctatttaattgctctttatctctattaattcctgttgcttatgcgctacacaatgcaaaatcaacttgatagtatctgttgcaagttagaattaa
 ||||| |||||||| || || || || || || ||||| ||||| ||||| ||||||||||| ||||||||||| ||   ||| ||   | | |||||||| ||      |   | |   | | |   |  | |    |||| |    | | | ||        |  | ||  | ||   |||  |    | |  |   
-ATTGGGGATGAGACGTTTATAATAGCAGCTCTCATGGCTATGCGTCACCCTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACAgtaagtgcaacatgggatgcatttttggttataatatatttgcattgttgtttctcatcatgggttgcatttttttgttgttgtgacggaatggtttgtg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74239214|gb|DT647128.1|DT647128
EST:     ATCTGCGCTTTATGTGATGACA                         GTATTGTCAACTGGACTGGGCAGAATAGTGCCCAACTTGATATCAAGGAAG
genomic: ATCTGCGCTTTATGTGATGACAgtgagctatt ... ccccaacaagGTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAG
EST: gi|88747529|gb|DY531670.1|DY531670
EST:     CTATCTGCGCTTTATGTGATGACA                         GTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAG
genomic: CTATCTGCGCTTTATGTGATGACAgtgagctatt ... ccccaacaagGTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAG
EST: gi|149055348|gb|EE156262.2|EE156262
EST:     CCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACA                         GTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAG
genomic: CCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACAgtgagctatt ... ccccaacaagGTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAG
EST: gi|60358343|gb|DN225316.1|DN225316
EST:     CCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACA                         GTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAG
genomic: CCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACAgtgagctatt ... ccccaacaagGTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAG