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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAAACATTGCTCATTTGACTCATGTGAGTGAGATGGAAAAGAAGTGCGAGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataagccacatacctgcattgtattattcttgcttcctttcttgagtttcaaggttatatgttgttttagtcagatgtgtcaagagcagttacatatgcattagccagttgatcacttgatctacgtgtctaaaattgtgtctattgtctatcag

Basic information

species Zea mays
transcript GRMZM2G151580_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151580_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g10410.1 (Oryza sativa), 5'ss of exon 3
TAAAAACATTGCTCATTTGACTCATGTGAGTGAGATGGAAAAGAAGTGCGAGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataagccacatacctgcattgtattattcttgcttcctttcttgagtt-tcaaggttatatgttgttttagtcagatgtgtcaagagcagttacatatgcattagccagttgatcacttgatctacgtgtctaaaattgtg-tctattgtctatcag
|||||| ||||||||| ||||||| || ||||||||||| |||||||| || |||||||||||||| ||  | |||||||||||||||||||| |||||||||||  ||| |||| |      ||  | |  |||| |||    |    |||| |  || ||   |||   |  ||   | |  | |   | |  |  | ||| | ||| ||  |||  ||    | ||| |  ||| ||||  || ||  || || |||||
TAAAAATATTGCTCATCTGACTCACGTTAGTGAGATGGAGAAGAAGTGTGAATCTTTGGCCAGAATCACCACTATTTTGAAAGATGTAATTCAAAACAAGgtaattgaagtcacaaattgttctttcacttgtctttcttgggattaccagttattcagattgattgtg--tgaagaacgttccgcctgcatctctgccctatacgttatccgattgtaca---aacctatgcatctgaaataatgatcctttttccatcag

upper sequence: GRMZM2G151580_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA20G28950.2 (Glycine max), 5'ss of exon 4
TAAAAACATTGCTCATTTGACTCATGTGAGTGAGATGGAAAAGAAGTGCGAGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataagccacatacctgcattgt-attattct--tgcttcctttcttgagtttcaaggttatatgttgtt-ttagtcagatgtgtcaagagcagttacatatgcattagccagttgatcacttgatctacgtgtctaaaattgtgtctattgtctatcag
 |||||  |||| |||||||||||||||||||| ||||||||||||   ||| | ||||| || || ||| | ||  | |||||||| ||||||||||||||||| ||| |     || |    |   | |  | |  ||| ||        | |||| ||||| ||| || || ||  ||| || | |  |    |                                                                   
CAAAAATGTTGCACATTTGACTCATGTGAGTGAAATGGAAAAGAAGATTGAGACATTGGCAAGGATTACTACTATACTCAAAGATGTTATTCAGAACAAGgtaatgtaatctgtccactttagctaccactgctttagtgcatcacaatcaaattttccaggtt-tattttattattcttcacatttatataatataaaag---------------------------------------------------------------

upper sequence: GRMZM2G151580_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA10G38820.1 (Glycine max), 5'ss of exon 3
TAAAAACATTGCTCATTTGACTCATGTGAGTGAGATGGAAAAGAAGTGCGAGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataagccacatacctgcattgtattattcttgcttcctttcttgagtttcaaggttatatgttgttttagtcagatgtgtcaagagcagttacatatgcattagccagttgatcacttgatctacgtgtctaaaattgtgtctattgtctatcag
 |||||  |||| |||||||||||||||||||| ||||||||||||   ||| | ||||| || || ||| | ||  | |||||||| ||||||||||||||||| ||| |  |  ||     ||    ||    |||||   | | | |   ||| | ||   |   | ||||||    | |   |||      |||| ||  |  ||                                                   
CAAAAATGTTGCACATTTGACTCATGTGAGTGAAATGGAAAAGAAGATTGAGACATTGGCAAGGATTACTACTATACTCAAAGATGTTATTCAGAACAAGgtaatgtaatctgcccac-----tttagctaccactgctttagtgcatcacaatcaggttt---tccaggtttagtttattattctaagcatctataca-atataaaag---------------------------------------------------

upper sequence: GRMZM2G151580_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv12s0059g01290.t01 (Vitis vinifera), 5'ss of exon 3
TAAAAACATTGCTCATTTGACTCATGTGAGTGAGATGGAAAAGAAGTGCGAGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataagccacatacctgcattgtattattcttgcttcctttcttgagtttcaaggttatatgttgttttagtcagatgtgtcaagagcagttacatatgcattagccagttgatcacttgatctacgtgtctaaaattgtgtctattgtctatcag
||| ||  | || ||| | || ||||| ||||| |||||||||||||| ||| |||| || || || ||||| || ||||||||||| ||||| || ||||| || ||       |   |  |   | || ||| |  |  | | ||||| ||    |||  | |  |||||    || |||  |     |||||  ||  ||| | | |    | |                                           
TAAGAATGTGGCACATCTCACGCATGTAAGTGAAATGGAAAAGAAGTGTGAGACTTTAGCAAGGATTACTGCTATATTGAAAGATGTTATTCAAAATAAGgtgatgta-----tttggttcta--attttgttcatcatagcctacttgaatt----ggtattctagtgttt----catatgccttggttgcagtgtca--tgcttcatcttaataa-------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8383242|gb|BE056185.1|BE056185
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|58029918|gb|CX725345.1|CX725345
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|211100223|gb|FL405650.1|FL405650
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGC
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGC
EST: gi|211451594|gb|FL373081.1|FL373081
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTT
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTT
EST: gi|211111976|gb|FL386053.1|FL386053
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|76934754|gb|DV174014.1|DV174014
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|86470304|gb|DY236674.1|DY236674
EST:     TGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: TGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|211482108|gb|FL397167.1|FL397167
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|28910110|gb|CB331266.1|CB331266
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|74245692|gb|DT653606.1|DT653606
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|113701683|gb|EE679187.1|EE679187
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|149079676|gb|EE168672.2|EE168672
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|148965294|gb|EE016099.2|EE016099
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|101394443|gb|EB819156.1|EB819156
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|31350966|gb|CD435323.1|CD435323
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|78110456|gb|DV528866.1|DV528866
EST:     CTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGTTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: CTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|211223287|gb|FL370924.1|FL370924
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCC
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCC
EST: gi|211469271|gb|FL411607.1|FL411607
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCC
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACC-
EST: gi|60341829|gb|DN208802.1|DN208802
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|31352195|gb|CD436552.1|CD436552
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|149059488|gb|EE156973.2|EE156973
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|78110457|gb|DV528867.1|DV528867
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|211134623|gb|FL369505.1|FL369505
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|74245691|gb|DT653605.1|DT653605
EST:     GACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: GACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|22545500|gb|BU097859.1|BU097859
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|211259909|gb|FL431082.1|FL431082
EST:     AGATGTATTTCAGAACAGG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: AGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|211313156|gb|FL384840.1|FL384840
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACA
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACA
EST: gi|86467153|gb|DY233523.1|DY233523
EST:     AGTCTTTGGCCAAAATGACTGCAATTTTGAAAGATGTAATTCAAAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|101391367|gb|EB817618.1|EB817618
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|211032703|gb|FL419052.1|FL419052
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|211023129|gb|FL428619.1|FL428619
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
EST: gi|22473167|gb|BU037647.1|BU037647
EST:     AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAG                         GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA
genomic: AGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 138

TAAAAACATTGCTCATTTGACTCATGTGAGTGAGATGGAAAAGAAGTGCGAGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 82

TAAAAACATTGCTCATTTGACTCATGTGAGTGAGATGGAAAAGAAGTGCGAGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 74

TAAAAACATTGCTCATTTGACTCATGTGAGTGAGATGGAAAAGAAGTGCGAGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 106

TAAAAACATTGCTCATTTGACTCATGTGAGTGAGATGGAAAAGAAGTGCGAGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataag ... tgtctatcagGATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAAAAACATTGCTCATTTGACTCATGTGAGTGAGATGGAAAAGAAGTGCGAGTCTTTGGCCAGAATGACTGCAATTTTGAAAGATGTAATTCAGAACAAGgtaatataagccacatacctgcattgtattattcttgcttcctttcttgagtttcaaggttatatgttgttttagtcagatgtgtcaagagcagttacatatgcattagccagttgatcacttgatctacgtgtctaaaattgtgtctattgtctatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG