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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAGgttcgtctgttacaatctcaatatttgtcatttgctgacatgaaattacaatttgtaccattctggcaatagtagttttgggagcagcattttattatca...

Basic information

species Zea mays
transcript GRMZM2G151549_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151549_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA02G33770.1 (Glycine max), 5'ss of exon 4
AGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAGgttcgtctgttacaatctc-------aatatttgtcatttgctgacatgaaattacaatttgtaccattctggcaatagtagttttgggagcag-cattttattatca------------------------------------------------------
|| | || | ||| ||||||||||||||||||  |||||||||||| ||||| ||||| ||||| ||||     || ||||||||||||   ||||||| ||  | || ||||  |||         |||  ||  |||   ||  | || ||| ||  |  |    || |     || |  || |   |   | || ||| |   |                                                       
AGGTGCAAAGCAGAATATGGCTGATGCATTGGAGTCTGTTCATCTTTTTTAATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAgtatgcct-ttactctcttttcctaggatacctgagattatttg-taggatatttcacatgctttacttttactgttaatccttgtcaaactggtcaatttctctccctctctctagtgtcggcttgttgttgcatcatctaatatatggtttaatttttag

upper sequence: GRMZM2G151549_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA10G16090.1 (Glycine max), 5'ss of exon 4
AGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAGgttcgtct----gttacaatctcaatatttgtcatttgctgacatgaaattacaatttgtaccattctggcaatagtag--------ttttgggagcagcattttattatca------------------------------------------------------------
|| | || | ||| ||||||||||||||||||  |||||||||||| ||||| ||||| ||||| ||||     || ||||||||||||   ||||||| ||  | ||      | |  ||| |  || | |||  ||||    |   |||   |||  |  | |  |   | | ||           | |    |   |  |||||| |                                                              
AGGTGCAAAGCAGAATATGGCTGATGCATTGGAGTCTGTTCATCTTTTTTAATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAgtatgccttaccaatcctttcttaggatatttcacatgctttacttttattgttattcttgtcctcgtcaaactggtcaactgcttcctctctttgggtcgctttattgttgcatcttctaggcttagtatttgtaatgctgcttcatctatagatatgatgtaattttcag

upper sequence: GRMZM2G151549_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT3G57290.1 (Arabidopsis thaliana), 5'ss of exon 4
AGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAGgttcgtctgttacaatct-caatatttgtcatttgctgaca--tgaaattacaatttgtaccattctggcaatagtagttttgggagcagcattttattatca
|| | ||||||||||| ||| |||||||||||| |||||  ||||| ||||||||||| ||||| || |    |||||||||||| ||   ||| |||| ||  | || |  |  |||   || |   ||  ||  | | |  |   || || || | |  | ||  |    ||  |       || |   ||   || |   
AGGTGCAGAACAGGATTTGGTTGATGCATTGGGGTCTGTATATCTTTTTTAACCATGATAATGGAAGGACACAGATCATTGATCTTTTTAACCAAGACAAgtaagcctctacctctctgttatctgcatctcttctttatacctttcatcaccatctatttccttgcgttt-taagataagcatgatctagatgcgatgaa--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148947189|gb|EC892527.2|EC892527
EST:     AACCATGAAAATGGTAGAAATGAGATCATTGATCTGTTCTTCCAGGACAG                         GTACTTGAATGCTATACAG
genomic: AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAGgttcgtctgt ... tcccttgcagGTACTTGAATGCTATACAG
EST: gi|67023707|gb|CO452456.1|CO452456
EST:     AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAG                         GTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGC
genomic: AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAGgttcgtctgt ... tcccttgcagGTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGC
EST: gi|149086591|gb|EE176135.2|EE176135
EST:     AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAG                         GTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGC
genomic: AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAGgttcgtctgt ... tcccttgcagGTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGC
EST: gi|71772604|gb|DR970532.1|DR970532
EST:     AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAG                         GTACTTGAATGCTATACAGACAAATG
genomic: AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAGgttcgtctgt ... tcccttgcagGTACTTGAATGCTATACAGACAAATG
EST: gi|148932020|gb|EC875324.2|EC875324
EST:     AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAG                         GTACTTGAATGCTATACAGACAAATGCACACCATCTTATTANGTATCTAGC
genomic: AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAGgttcgtctgt ... tcccttgcagGTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGC
EST: gi|6020868|gb|AW065796.1|AW065796
EST:     AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAG                         GTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGC
genomic: AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAGgttcgtctgt ... tcccttgcagGTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGC
EST: gi|6056588|gb|AW090993.1|AW090993
EST:     AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAG                         GTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGC
genomic: AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAGgttcgtctgt ... tcccttgcagGTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGC
EST: gi|6194537|gb|AW146641.1|AW146641
EST:     GGGATCATTGATCTGTTCTTCCAGGACAG                         GTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGC
genomic: GGGATCATTGATCTGTTCTTCCAGGACAGgttcgtctgt ... tcccttgcagGTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGC