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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGTAACCTGgtaactggtgaccattcctaatatttcttttttgcatttcgggaagcaaacatccattaatgttcccctgttttgtttgtatatcag

Basic information

species Zea mays
transcript GRMZM2G151268_T03
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211008060|gb|FL363360.1|FL363360
EST:     TGCTTCACCTTCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: TGCTTCACCTTCAGAGTGTAACCTGgtaactggtg ... tgtatatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|23357627|gb|BU645276.1|BU645276
EST:     CAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: CAGAGTGTAACCTGgtaactggtg ... tgtatatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|78122445|gb|DV540829.1|DV540829
EST:     CAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: CAGAGTGTAACCTGgtaactggtg ... tgtatatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|89106102|gb|DY576319.1|DY576319
EST:     CAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAATTGAAAGACTTCTCTAACAAAAGTGGA
genomic: CAGAGTGTAACCTGgtaactggtg ... tgtatatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|211198617|gb|FL362511.1|FL362511
EST:     TGCTTCACCTTCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: TGCTTCACCTTCAGAGTGTAACCTGgtaactggtg ... tgtatatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|211144130|gb|FL475584.1|FL475584
EST:     TGCTTCACCTTCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: TGCTTCACCTTCAGAGTGTAACCTGgtaactggtg ... tgtatatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA