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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaactggtgaccattcctaatatttcttttttgcatttcgggaagcaaacatccattaatgttcccctgttttgtttgtatatcag

Basic information

species Zea mays
transcript GRMZM2G151268_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151268_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os12g01170.1 (Oryza sativa), 5'ss of exon 3
GTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaactggtgaccattcctaatatttcttttttgcat-ttcgggaagcaaacatccattaatgttccc------------ctgttttgtttgtatatcag
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GTAGGTTATTAACAGCACTTGTAAGTGAATACTTGGAGTGGGCCCAGCTAAGTCACACGATGAAAGTTTATCTGCCTGAATGTAATCTGgtaacagtttgccatatctcataaatcttggatggatatgtccaaaatcaacatctgctaatgctgctattgattgttggctgttgcatttgtaaatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211533622|gb|FL412539.1|FL412539
EST:     GGGCGCAATTWAGTCACACAATGAWAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGG
genomic: GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaactggtg ... tgtatatcagCCCAAGGACTTCTGG
EST: gi|9028689|gb|BE238729.1|BE238729
EST:     GGGCGCAATTAAGTCACACAATGAAAGTT-ACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAG
genomic: GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaactggtg ... tgtatatcagCCCAAGGACTTCTGGAAG
EST: gi|211029306|gb|FL370361.1|FL370361
EST:     GGGCGCAATTAAGTCACACAATGAA-GTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGATAGACTTCTCT
genomic: GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaactggtg ... tgtatatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCT
EST: gi|29945213|gb|CB815527.1|CB815527
EST:     GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaactggtg ... tgtatatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: gi|211511056|gb|FL378831.1|FL378831
EST:     GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAMC-TG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAAC
genomic: GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaactggtg ... tgtatatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAAC
EST: gi|211355840|gb|FL403701.1|FL403701
EST:     GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGT
genomic: GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaactggtg ... tgtatatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGT
EST: gi|211317656|gb|FL416767.1|FL416767
EST:     GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAMC-TG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGA
genomic: GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaactggtg ... tgtatatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGA
EST: gi|211156585|gb|FL395419.1|FL395419
EST:     GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaactggtg ... tgtatatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA