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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGCGTCCGTGAGAAAAGAACTGCAGTCAATGCACCCAGAAGATAGGCACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTTAAAGGACTAATTCAGgtgtgtattctatatctgagaaccatttacagctttcagattttgttagaattgtcatcacatggccctgctcggtacaactccctctccaagatttttt...

Basic information

species Zea mays
transcript GRMZM2G151254_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151254_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os06g50380.1 (Oryza sativa), 5'ss of exon 4
TATTGCGTCCGTGAGAAAAGAACTGCAGTCAATGCACCCAGAAGATAGGCACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTTAAAGGACTAATTCAGgtgtgtattctatatctgagaac-catttacagctttcag--attttgttagaattgtcatcacatggc-cctgctcggtacaactccctctccaagatttttt
 |||| ||| |||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||| ||  |||||  ||  |||| || ||  |||||| |   | |||| | |||   ||||  |||    ||| ||   |    |    |  |||  ||     
CATTGAGTCAGTGAGAAAAGAATTGCAGTCAATGCACCCGGAAGATAGGCATATTGTTGTTCTCAAGCACAACGTTTGGCGTGTAAAAGGTCTAATTCAGgtgagttctctatcactatgaacacagttttagctttgaagaagtttgattgaaggatcatttcatattgcctcctgcatctgccattattcccatcatc----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32848117|gb|CD987798.1|CD987798
EST:     ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTTAAAGGACTAATTCAG                         GTTTGTAGATCAATTGGTGATGCATATCTCAAAAAGCAAGAGTTCAACAGG
genomic: ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTTAAAGGACTAATTCAGgtgtgtattc ... tgcattgcagGTTTGTAGATCAATTGGTGATGCATATCTCAAAAAGCAAGAGTTCAACAGG
EST: gi|13382135|gb|BG458810.1|BG458810
EST:     ACATTGGTGTTCTCAAGCACAATGTTTGGCGTGTTAAAGGACTAATTCAG                         GTTTGTAGATCAATTGGTGATGCATATCTCAAAAAGCAAG
genomic: ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTTAAAGGACTAATTCAGgtgtgtattc ... tgcattgcagGTTTGTAGATCAATTGGTGATGCATATCTCAAAAAGCAAG
EST: gi|71300865|gb|DR786463.1|DR786463
EST:     ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTTAAAGGACTAATTCAG                         GTTTGTAGATCAATTGGTGATGCATATCTCAAAAAGCAAGAGTTCAACAGG
genomic: ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTTAAAGGACTAATTCAGgtgtgtattc ... tgcattgcagGTTTGTAGATCAATTGGTGATGCATATCTCAAAAAGCAAGAGTTCAACAGG