Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGCGCGACGTGCTGCGCGCCAGCTCCGCCCGGCGGTTCGGGATGAAGGCCCGGGCCAGCCACCACGCCCGCCGCGACTCGACCAGCAGCGGCCACGAGgtcagtctctctcatcagccactaaccttcttctcgccttcgcctcgctcgccattagtactgcactactgctgctccattaaagctggattagttgggg...

Basic information

species Zea mays
transcript GRMZM2G150962_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150962_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g07570.1 (Oryza sativa), 5'ss of exon 3
GGCGCGCGACGTGCTGCGCGCCAGCTCCGCCCGGCGGTTCGGGATGAAG--GCC-CGGGCCAGCCACCACGCCCGCCGCGACTCGACCAGCAGCGGCCACGAGgtcagtctctc---tcatcagccactaaccttctt-ctcgccttcgcctcgctcgccattagtactgcactactgctgctccattaaagctggattagttgggg
   ||||||||||||  |  | |||||||||   |||||||||||||||  ||| || |||  |  |  || |||||||||||| ||||||  |||||||||||||||||  ||     |   |||  | |||  |   |||||| ||| |  ||||||| |   |  |  |  | | ||||  ||| ||  |   |||| ||||  
---GCGCGACGTGCTCAGGTCTAGCTCCGCCGTCCGGTTCGGGATGAAGCAGCCACGCGCCGCCGGCGTCGTCCGCCGCGACTCCACCAGCGACGGCCACGAGgtcagtcagtcaaccaactcgccggtcaccggcgagctcgccgtcggcaagctcgccctccatg-tatatcatt-ctgcatcatcaattcatcatta-ttggt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50330983|gb|CO526109.1|CO526109
EST:     CCCGGGCCAGCCACCACGCCCGCCGCGACTCGACCAGCAGCGGCCACGAG                         CACGCGGTGGGGTACGTGACGGGGGACCAGTTCT
genomic: CCCGGGCCAGCCACCACGCCCGCCGCGACTCGACCAGCAGCGGCCACGAGgtcagtctct ... acgggcgcagCACGCGGTGGGGTACGTGACGGGGGACCAGTTCT
EST: gi|91868007|gb|EB399887.1|EB399887
EST:     CCCGGGCCAGCCACCACGCCCGCCGCGACTCGACCAGCAGCGGCCACGAG                         CACGCGGTGGGGTACGTGACGGGGGACCAGTTCTACGGCGCCAAGGCCAGC
genomic: CCCGGGCCAGCCACCACGCCCGCCGCGACTCGACCAGCAGCGGCCACGAGgtcagtctct ... acgggcgcagCACGCGGTGGGGTACGTGACGGGGGACCAGTTCTACGGCGCCAAGGCCAGC