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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTATCCTTACAAATCCCCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtgagtacttttgaactcaatgacctgttaccttgtcaatttcaaccacattaaaaatctagctcctaaccactcctggatgaatgcaacctgcag

Basic information

species Zea mays
transcript GRMZM2G150867_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150867_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os10g31000.1 (Oryza sativa), 5'ss of exon 3
GTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTATCCTTACAAATCCCCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtgagtacttttgaactcaatgacctgttaccttgtcaatttcaaccacattaaaaatctagctcctaaccactcctggatgaatgcaacctgcag
|| | |||| ||||||||||||| |||| ||||| |||||||||||||| || |||||||||||| | || ||||| ||||| || ||||| ||||||||||||| |  |||||  || ||  ||| || |       |||  | |     |||  |  |    |  | |  ||  ||   || |  ||  || ||
GTGTCTGGAAGGTTAGAGTAGAATTGCCTGATGCATATCCTTACAAATCTCCGTCGATTGGTTTCGTTAACAAGATTTATCATCCTAATGTGGATGAAATgtgagga--tttgatgtccataccctttt-ctggaatgattgaagcttgtgtaatcaattgttgctgacctgcttttgttggacttgaaaatgtag

upper sequence: GRMZM2G150867_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA18G46940.1 (Glycine max), 5'ss of exon 3
GTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTATCCTTACAAATCCCCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtgagtacttttgaactcaatgacctgttaccttgtcaatttcaaccacattaaaaat---ctagctcc-----taaccactcctggatgaatgcaacctgcag------------------------
 | | ||||  || ||||| ||  |||| ||||| |||||||||||||| || || ||||| || ||||| ||||| |||||||||||||| ||||| |||| || || |   |    ||||  |||  |  |||||  | |  |  |  ||| |  |    ||| |       |||       | | ||  |   | |||                           
-TGTGTGGAAAGTAAGAGTTGAGTTGCCGGATGCTTATCCTTACAAATCTCCTTCCATTGGCTTTATCAACAAGATCTATCACCCAAATGTTGATGAGATGtaagcacatagtagt--aatgctctgaaaa-ttgtctgtattgagtagtttacatgtgtattagatataagaataattgtgtgtcggtgcgtctgatctgatcatcttggataacattaatttcagg

upper sequence: GRMZM2G150867_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA09G39370.1 (Glycine max), 5'ss of exon 2
GTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTATCCTTACAAATCCCCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtgagtacttttgaactcaatgacctgttaccttgtcaatttcaaccacattaaaaatctagctcctaaccactcctg-gatgaatgcaacctgcag-------
|| | ||||  || ||||| ||  |||| ||||| |||||||||||||| || || ||||| || ||||| ||||| |||||||| ||||| ||||| |||| || || |   |    ||||  |||  |  |||||  | |  |  |  ||     ||||    || |       |  ||| |     |  |  |        
GTGTGTGGAAAGTAAGAGTTGAGTTGCCGGATGCTTATCCTTACAAATCTCCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacatagtagt--aatgctctgaaaa-ttgtctgtattgagta-gttgcgtgtctattagctgatagaatatatgataagatatatttagataatatat

upper sequence: GRMZM2G150867_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA16G03940.2 (Glycine max), 5'ss of exon 3
GTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTATCCTTACAAATCCCCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtga-------gtacttttgaa-----ctcaatgacctgttaccttgt-caatttcaaccacattaa----aaatctagctcctaaccactcctggatgaatgcaacctgcag
|| ||||||  || ||||| || ||||||||||| |||||||| ||||| || || || || || ||||||||||| |||||||||||||| ||||| |||| |       ||| |||| ||     ||     ||    ||| |||   | |||        ||||    || | | |      | || |  ||||| |    ||  | |||
GTGTATGGAAAGTAAGAGTTGAGCTGCCAGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATgtaaaaatattgtattttttaatattgctgcgaaactctatactttgagtagtttgccttgtgttaattttaagtattgtgtgcgatca-tattggattataataattt-cag

upper sequence: GRMZM2G150867_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA07G07540.3 (Glycine max), 5'ss of exon 2
GTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTATCCTTACAAATCCCCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtgagtacttttgaactcaatgacctgttaccttgtcaatttcaaccacattaaaaatctagctcctaaccactcctgga--tgaatgcaacc-tgcag-------------------
|| | ||||  || || || || ||||||||||| |||||||| ||||| || || || || || ||||||||||| |||||||||||||| ||||| |||| || | | ||| | |  ||    | || |  ||  ||  || |   | | |  | | |  ||  |    | |    ||  ||  ||  | | |   |                   
GTGTGTGGAAAGTGAGGGTTGAGCTGCCAGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATgtaagaa-tcttgtatt--attgaatattgc--tgcgaaactctataccttgagtagtttgccttgtgttaattttaagaattgtgtgtgatcatattggatattataataatttcag

upper sequence: GRMZM2G150867_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT1G63800.1 (Arabidopsis thaliana), 5'ss of exon 3
GTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTATCCTTACAAATCCCCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtgagtacttttgaactcaatgacctgttaccttgtcaatttcaaccacattaaaaatctag--------ctcctaaccactcctggatgaatgcaacc-tgcag
|| | |||| | | ||||| ||||| || ||||| |||||||| ||||| |||||  |||||||||| |  || ||||| ||||| |||||||||||||||||||| |  | |||      || || ||         |||     |    |  |||||| |         |  |    |  |||   || |||      |||||
GTGTGTGGAAGATAAGAGTTGAACTTCCTGATGCTTATCCTTATAAATCTCCATCTGTTGGTTTCATTACCAAAATATACCACCCTAATGTCGATGAAATgtgagttcaatcgaatcagtagatcttttggaggagtgattatgttccttctccaaatcttgagtggtgcttatttgttatccctctttgtatgtggttatgcag

upper sequence: GRMZM2G150867_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv15s0046g02280.t01 (Vitis vinifera), 5'ss of exon 3
GTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTATCCTTACAAATCCCCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtgagtactt----------ttgaactcaatgacc-tgttaccttgtcaatttcaaccacat--------taaaaatctagct-cctaaccactcctggatgaatgcaacctgcag
|| | |||||| ||||||| || || |||||||| |||||||||||||| || || ||||| ||  | |||||||| || ||||||||||| |||||||||||||   ||          ||||  | | | |   ||||   ||||  ||| ||  || ||        |   | | | |    || ||||   | | |||  |  ||  | |||
GTGTTTGGAGGATTAGAGTTGAGCTTCCAGATGCTTATCCTTACAAATCTCCCTCAATTGGCTTTGTTAATAAGATCTACCACCCAAATGTTGATGAAATgtgagagtttaaatgctaagttgatgtaatttattatgttgggttgttcattgcattcatatacttaatgtgggattttggaaatctgaccatgacggcatgtgt-taaatttcag

upper sequence: GRMZM2G150867_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv02s0025g00070.t01 (Vitis vinifera), 5'ss of exon 3
GTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTATCCTTACAAATCCCCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtgagtacttttgaactcaatgacctgttacctt-gtcaatttcaaccacattaaaaatctagctcctaaccactcctggatgaatgcaacctgcag--------------------------------
|| | |||||| | || || || || |||||||| |||||||| ||||| ||||| ||||||||  |||| ||||| || ||||||||||| ||||| ||||||||    | ||  |  |  ||||  ||| |  |      | | |  ||||     | ||  |   || || |   | |  | ||       ||                                 
GTGTGTGGAGGATAAGGGTGGAGCTACCAGATGCTTATCCTTATAAATCTCCATCTATTGGTTTTGTCAACAAGATCTACCACCCAAATGTTGATGAGATgtgagt-tagtggatgtttaaaacctagtacttcagcttgcatgagctgcatttttcttatatatgacaaaca-taaggaagaattggttttctcaaatatgacaatcttgtgggtctttgagtttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6056913|gb|AW091318.1|AW091318
EST:     CCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAAT                         GTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT
genomic: CCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtgagtactt ... caacctgcagGTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT
EST: gi|26559982|gb|CA832217.1|CA832217
EST:     CCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAAT                         GTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT
genomic: CCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtgagtactt ... caacctgcagGTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT
EST: gi|211541018|gb|FL000893.1|FL000893
EST:     CCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAAT                         GTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT
genomic: CCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtgagtactt ... caacctgcagGTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT
EST: gi|211427763|gb|FL233521.1|FL233521
EST:     CCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAAT                         GTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT
genomic: CCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtgagtactt ... caacctgcagGTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT
EST: gi|37394410|gb|CF634479.1|CF634479
EST:     CCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAAT                         GTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT
genomic: CCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtgagtactt ... caacctgcagGTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT
EST: gi|12971358|gb|BG267442.1|BG267442
EST:     CCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAAT                         GTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT
genomic: CCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtgagtactt ... caacctgcagGTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT
EST: gi|84980137|gb|DW530486.1|DW530486
EST:     CCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAAT                         GTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT
genomic: CCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtgagtactt ... caacctgcagGTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT
EST: gi|28984207|gb|BQ538996.2|BQ538996
EST:     CCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAAT                         GTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT
genomic: CCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtgagtactt ... caacctgcagGTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT
EST: gi|15427006|gb|BI542828.1|BI542828
EST:     CCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAAT                         GTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT
genomic: CCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtgagtactt ... caacctgcagGTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT
EST: gi|32911041|gb|CF015853.1|CF015853
EST:     CCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAAT                         GTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT
genomic: CCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtgagtactt ... caacctgcagGTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT
EST: gi|5455873|gb|AI833563.1|AI833563
EST:     CCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAAT                         GTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT
genomic: CCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtgagtactt ... caacctgcagGTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT
EST: gi|5525634|gb|AI861527.1|AI861527
EST:     CCNTCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAAT                         GTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT
genomic: CCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtgagtactt ... caacctgcagGTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT
EST: gi|211096443|gb|FL454804.1|FL454804
EST:     CCATCGATT-GTTTCATCAATAAGATATATCACCCAAATGTCGATGAAAT                         GTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT
genomic: CCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtgagtactt ... caacctgcagGTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTT