1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTACATCGCGCACCTGGATGATATCTACAAGGACTTCAACAACTACAAGTTTCGTGTGCCTGTGTCCGGCGCCATCATCCTAGACGACACTTATGAGAGGgtaatttactgatttttttgccccaacatattgcattttagagttccatgtcgattgtaggttgaacaatatcatttcccttacatttgaaatcagtagg...
species | Zea mays |
transcript | GRMZM2G150209_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCGTGTGCCTGTGTCCTGCGCCATCATCCTAGACGACACTTATGAGAGG TGCTTGCTTGTTAAAGGATGGAAGGCTGGGGCCAGCTGGAGCTTTCCTCGTEST: gi|78087169|gb|DV515562.1|DV515562
genomic: TTCGTGTGCCTGTGTCCGGCGCCATCATCCTAGACGACACTTATGAGAGGgtaatttact ... ttctctgcagTGCTTGCTTGTTAAAGGATGGAAGGCTGGGGCCAGCTGGAGCTTTCCTCGT
EST: TTCGTGTGCCTGTGTCCGGCGCCATCATCCTAGACGACACTTATGAGAGG TGCTTGCTTGTTAAAGGATGGAAGGCTGGGGCCAGCTGGAGCTTTCCTCGTEST: gi|78104490|gb|DV522908.1|DV522908
genomic: TTCGTGTGCCTGTGTCCGGCGCCATCATCCTAGACGACACTTATGAGAGGgtaatttact ... ttctctgcagTGCTTGCTTGTTAAAGGATGGAAGGCTGGGGCCAGCTGGAGCTTTCCTCGT
EST: TTCGTGTGCCTGTGTCCGGCGCCATCATCCTAGACGACACTTATGAGAGG TGCTTGCTTGTTAAAGGATGGAAGGCTGGGGCCAGCTGGAGCTTTCCTCGTEST: gi|5268613|gb|AI770577.1|AI770577
genomic: TTCGTGTGCCTGTGTCCGGCGCCATCATCCTAGACGACACTTATGAGAGGgtaatttact ... ttctctgcagTGCTTGCTTGTTAAAGGATGGAAGGCTGGGGCCAGCTGGAGCTTTCCTCGT
EST: TTCGTGTGCCTGTGTCCGGCGCCATCATCCTAGACGACACTTATGAGAGG TGCTTGCTTGTTAAAGGATGGAAGGCTGGGGCCAGCTGGAGCTTTCCTCGT
genomic: TTCGTGTGCCTGTGTCCGGCGCCATCATCCTAGACGACACTTATGAGAGGgtaatttact ... ttctctgcagTGCTTGCTTGTTAAAGGATGGAAGGCTGGGGCCAGCTGGAGCTTTCCTCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACATCGCGCACCTGGATGATATCTACAAGGACTTCAACAACTACAAGTTTCGTGTGCCTGTGTCCGGCGCCATCATCCTAGACGACACTTATGAGAGGgtaatttactgatttttttgccccaacatattgcattttagagttccatgtcgattgtaggttgaacaatatcatttcccttacatttgaaatcagtagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG