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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTTCCAGCCCATGCTTATGCTCGGCATAACCATCGGCGTAGAGCTCAGCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatcatcgcttgcctttagcttttggtgcctactgttctgtgcgcccgtcccgtgtactgtgtagtcactgagatgaaaacctgtgctgtattcgtgtggacccattcattgcag

Basic information

species Zea mays
transcript GRMZM2G149576_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149576_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g51650.1 (Oryza sativa), 5'ss of exon 3
GCTCTTCCAGCCCATGCTTATGCTCGGCATAACCATCGGCGTAGAGCTCAGCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatcatcgcttgcc--tttagcttttggtgcctactg----ttctgtgcgcccgtcc----cgtgtactgtgtagtcactgagatgaaaacctgtgctgtattcgtgtggacccattcattgcag
    |||||||||||||| |||||||| || || ||||| || |||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||| |||||    |  |||  |   | |    ||  |  |   |||    || ||||   | ||||    ||||  |||||   || |||||||  |    |||   ||   | ||       ||  |||||||
----TTCCAGCCCATGCTCATGCTCGGGATCACAATCGGAGTCGAGCTCAGCGTCATCTTCCCCTACTGGCTCATCACCGTCCTCATCATAATCCTCTTCATAGgtttgtacagctaacaaatgtgttgttaagcacgatctggcgcttttgtggcgctgtcctttgcgtgccctgtgagatcgctgagattgatgtgtgtttggtgcgcttg-------atcgattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211463999|gb|FL174252.1|FL174252
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGAATTCTGATGTGGGAGGGA
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGG-AGGGA
EST: gi|211082769|gb|FL187310.1|FL187310
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCC
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCC
EST: gi|211071814|gb|FL187256.1|FL187256
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGGAGGGA
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGG-AGGGA
EST: gi|211077290|gb|FL187281.1|FL187281
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCCTCTCGTA
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCC-TCT--TC
EST: gi|93282425|gb|EB674689.1|EB674689
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|211077292|gb|FL187283.1|FL187283
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAAGGGG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGA-GGG-
EST: gi|211071812|gb|FL187254.1|FL187254
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTANGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGAT
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGAT
EST: gi|211082767|gb|FL187308.1|FL187308
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAAATCCTTCTA-AAGGGCATTCTGATGGGGAAGGGA
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGA-GGGA
EST: gi|89762580|gb|DY690104.1|DY690104
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|149106424|gb|EE188313.2|EE188313
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|149081528|gb|EE170664.2|EE170664
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|32841700|gb|CD981381.1|CD981381
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         G
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcag-
EST: gi|32841700|gb|CD981381.1|CD981381
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         G
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcag-
EST: gi|32841700|gb|CD981381.1|CD981381
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         G
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcag-
EST: gi|32841700|gb|CD981381.1|CD981381
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         G
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcag-
EST: gi|32841700|gb|CD981381.1|CD981381
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         G
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcag-
EST: gi|76917339|gb|DV166774.1|DV166774
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|211082764|gb|FL187305.1|FL187305
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGGAGGGA
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGG-AGGGA
EST: gi|211469055|gb|FL174275.1|FL174275
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGAATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|71429319|gb|DR810369.1|DR810369
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|149081592|gb|EE170734.2|EE170734
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|211074544|gb|FL187264.1|FL187264
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|71769068|gb|DR967005.1|DR967005
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|211071816|gb|FL187258.1|FL187258
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTT
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTT
EST: gi|32840339|gb|CD980020.1|CD980020
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCAATCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|78111899|gb|DV530296.1|DV530296
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCTTTCTACA-GGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|71763997|gb|DR961934.1|DR961934
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|78088725|gb|DV517118.1|DV517118
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|148945267|gb|EC890477.2|EC890477
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|148945370|gb|EC890591.2|EC890591
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|211082768|gb|FL187309.1|FL187309
EST:     CGTCATCTTCCCATACTGGCTAATCACTGTCCCTCAT-ATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGGAGGGA
genomic: CGTCATCTTCCCATACTGGCTAATCACTGTCC-TCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGG-AGGGA
EST: gi|211469061|gb|FL174281.1|FL174281
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAAGCACCTCGTCGAGATCCTTCTACAAGGAAATTCTGATGTG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTG
EST: gi|76013549|gb|DT940719.1|DT940719
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|91052631|gb|EB163049.1|EB163049
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|13237072|gb|BG355086.1|BG355086
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         G
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcag-
EST: gi|13237072|gb|BG355086.1|BG355086
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         G
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcag-
EST: gi|13237072|gb|BG355086.1|BG355086
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         G
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcag-
EST: gi|13237072|gb|BG355086.1|BG355086
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         G
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcag-
EST: gi|13237072|gb|BG355086.1|BG355086
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         G
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcag-
EST: gi|211080033|gb|FL187299.1|FL187299
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAAGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATG
EST: gi|149076796|gb|EE165445.2|EE165445
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGA
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACC-TCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGA
EST: gi|149106747|gb|EE188643.2|EE188643
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|50323960|gb|CO519086.1|CO519086
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|71772906|gb|DR970829.1|DR970829
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|211469054|gb|FL174274.1|FL174274
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGG-ATTCTGATGTGGAGGG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGG
EST: gi|149081259|gb|EE170373.2|EE170373
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|93283801|gb|EB676065.1|EB676065
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|149001890|gb|EE038842.2|EE038842
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|78104608|gb|DV523026.1|DV523026
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|71769874|gb|DR967811.1|DR967811
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|13237258|gb|BG355272.1|BG355272
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         G
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcag-
EST: gi|13237258|gb|BG355272.1|BG355272
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         G
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcag-
EST: gi|13237258|gb|BG355272.1|BG355272
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         G
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcag-
EST: gi|13237258|gb|BG355272.1|BG355272
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         G
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcag-
EST: gi|13237258|gb|BG355272.1|BG355272
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         G
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcag-
EST: gi|93284314|gb|EB676578.1|EB676578
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|211074546|gb|FL187266.1|FL187266
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTANGGCACCTCGTCGAGATCCTTCTACAGGGGCATTCTGATGTGGGAAGG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG-----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGG-AGGG
EST: gi|211074549|gb|FL187269.1|FL187269
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
EST: gi|78082192|gb|DV510604.1|DV510604
EST:     GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTC                         GTAGGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG
genomic: GCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagG----CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 44 (downstream exon)
Score: 151

GCTCTTCCAGCCCATGCTTATGCTCGGCATAACCATCGGCGTAGAGCTCAGCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 612

GCTCTTCCAGCCCATGCTTATGCTCGGCATAACCATCGGCGTAGAGCTCAGCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 379

GCTCTTCCAGCCCATGCTTATGCTCGGCATAACCATCGGCGTAGAGCTCAGCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG


Block sizes: 47 (upstream exon), 46 (downstream exon)
Score: 222

GCTCTTCCAGCCCATGCTTATGCTCGGCATAACCATCGGCGTAGAGCTCAGCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCgtaggtaatc ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG