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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCAGCCCATGCTTATGCTCGGCATAACCATCGGCGTAGAGCTCAGCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcgcttgcctttagcttttggtgcctactgttctgtgcgcccgtcccgtgtactgtgtagtcactgagatgaaaacctgtgctgtattcgtgtggacccattcattgcag

Basic information

species Zea mays
transcript GRMZM2G149576_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149576_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g51650.1 (Oryza sativa), 5'ss of exon 3
TTCCAGCCCATGCTTATGCTCGGCATAACCATCGGCGTAGAGCTCAGCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcgcttgcc--tttagcttttggtgcctactg----ttctgtgcgcccgtcc----cgtgtactgtgtagtcactgagatgaaaacctgtgctgtattcgtgtggacccattcattgcag
|||||||||||||| |||||||| || || ||||| || |||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||| |||||    |  |||  |   | |    ||  |  |   |||    || ||||   | ||||    ||||  |||||   || |||||||  |    |||   ||   | ||       ||  |||||||
TTCCAGCCCATGCTCATGCTCGGGATCACAATCGGAGTCGAGCTCAGCGTCATCTTCCCCTACTGGCTCATCACCGTCCTCATCATAATCCTCTTCATAGgtttgtacagctaacaaatgtgttgttaagcacgatctggcgcttttgtggcgctgtcctttgcgtgccctgtgagatcgctgagattgatgtgtgtttggtgcgcttg-------atcgattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71429319|gb|DR810369.1|DR810369
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|71769068|gb|DR967005.1|DR967005
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|93283801|gb|EB676065.1|EB676065
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|78111899|gb|DV530296.1|DV530296
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCTTTCTACA-GGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|32841700|gb|CD981381.1|CD981381
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCAATCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|211463999|gb|FL174252.1|FL174252
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGAATTCTGATGTGGGAGGGAGGAG
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGG-AGGGAGGAG
EST: gi|211469060|gb|FL174280.1|FL174280
EST:     ATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCCTCT-CGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGAATTCTGATGTGGAAGGGAGGA
genomic: ATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCC-TCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGA-GGGAGGA
EST: gi|211469055|gb|FL174275.1|FL174275
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGAATTCTGATGTGGAGGGAGGAGA
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|50323960|gb|CO519086.1|CO519086
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|78104608|gb|DV523026.1|DV523026
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|211074549|gb|FL187269.1|FL187269
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|211082767|gb|FL187308.1|FL187308
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAAATCCTTCTA-AAGGGCATTCTGATGGGGAAGGGAGGAG
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGA-GGGAGGAG
EST: gi|211080033|gb|FL187299.1|FL187299
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAA                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATG
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATG
EST: gi|76013549|gb|DT940719.1|DT940719
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|93282425|gb|EB674689.1|EB674689
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|91052631|gb|EB163049.1|EB163049
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|71772906|gb|DR970829.1|DR970829
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCG---                         -CACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|148945370|gb|EC890591.2|EC890591
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|32840339|gb|CD980020.1|CD980020
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCAATCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|211071816|gb|FL187258.1|FL187258
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTT
EST: gi|211074546|gb|FL187266.1|FL187266
EST:     ATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTANG                         GCACCTCGTCGAGATCCTTCTACAGGGGCATTCTGATGTGGGAAGGAGGG
genomic: ATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTA-Ggtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGG-AGGGAGG-
EST: gi|211466533|gb|FL174266.1|FL174266
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACA-GGGAATTCTGATGTGGAGGGAGGAGA
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|148945267|gb|EC890477.2|EC890477
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|78082192|gb|DV510604.1|DV510604
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|149081592|gb|EE170734.2|EE170734
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|149106747|gb|EE188643.2|EE188643
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|211466522|gb|FL174255.1|FL174255
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCG
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCG
EST: gi|71769874|gb|DR967811.1|DR967811
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|211082765|gb|FL187306.1|FL187306
EST:     ATCTTCCCATACTGGGCTAATCACTGGCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACA-GGGCATTCTGATGGGGAAGGGAG-AG
genomic: ATCTTCCCATACTGG-CTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGA-GGGAGGAG
EST: gi|149081259|gb|EE170373.2|EE170373
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|211469061|gb|FL174281.1|FL174281
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAA                         GCACCTCGTCGAGATCCTTCTACAAGGAAATTCTGATGTG
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTG
EST: gi|211082764|gb|FL187305.1|FL187305
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGGAGGGAGGAG
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGG-AGGGAGGAG
EST: gi|211469054|gb|FL174274.1|FL174274
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGG-ATTCTGATGTGGAGGG
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGG
EST: gi|149076796|gb|EE165445.2|EE165445
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGA
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACC-TCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGA
EST: gi|211071812|gb|FL187254.1|FL187254
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAN                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGAT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGAT
EST: gi|211077292|gb|FL187283.1|FL187283
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAAGGGGAGGA
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGA-GGG-AGGA
EST: gi|13237072|gb|BG355086.1|BG355086
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|211077290|gb|FL187281.1|FL187281
EST:     ATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCCTCT-CGTAG                         GCACCTCGTCGAGATCCTTCTACA-GGGCATTCTGATGTGGAGGGAGGGA
genomic: ATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCC-TCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGG-A
EST: gi|149081528|gb|EE170664.2|EE170664
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|211074544|gb|FL187264.1|FL187264
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|13237258|gb|BG355272.1|BG355272
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|149106424|gb|EE188313.2|EE188313
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|93284314|gb|EB676578.1|EB676578
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|149001890|gb|EE038842.2|EE038842
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|211082769|gb|FL187310.1|FL187310
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCC
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCC
EST: gi|76917339|gb|DV166774.1|DV166774
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|78088725|gb|DV517118.1|DV517118
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|71763997|gb|DR961934.1|DR961934
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|211071814|gb|FL187256.1|FL187256
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGGAGGGAGGAG
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGG-AGGGAGGAG
EST: gi|89762580|gb|DY690104.1|DY690104
EST:     CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
genomic: CATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGT
EST: gi|211082768|gb|FL187309.1|FL187309
EST:     ATCTTCCCATACTGGCTAATCACTGTCCCTCAT-ATAATCCTCTTCGTAG                         GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGGAGGGAGGAG
genomic: ATCTTCCCATACTGGCTAATCACTGTCC-TCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGG-AGGGAGGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 111

TTCCAGCCCATGCTTATGCTCGGCATAACCATCGGCGTAGAGCTCAGCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 380

TTCCAGCCCATGCTTATGCTCGGCATAACCATCGGCGTAGAGCTCAGCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 311

TTCCAGCCCATGCTTATGCTCGGCATAACCATCGGCGTAGAGCTCAGCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 129

TTCCAGCCCATGCTTATGCTCGGCATAACCATCGGCGTAGAGCTCAGCGTCATCTTCCCATACTGGCTAATCACTGTCCTCATTATAATCCTCTTCGTAGgtaatcatcg ... ttcattgcagGCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG