1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAGgaaaaaaatttgttgcagccgggctgcaaacggcctggtttgcagcccggctgcaacaaatttttttccgctcgggag
species | Zea mays |
transcript | GRMZM2G149481_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAG GCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGEST: gi|78125529|gb|DV543913.1|DV543913
genomic: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAGgaaaaaaatt ... cgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGG
EST: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAG GCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGEST: gi|94475285|gb|EB704243.1|EB704243
genomic: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAGgaaaaaaatt ... cgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGG
EST: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAG GCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGEST: gi|148973555|gb|EE024659.2|EE024659
genomic: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAGgaaaaaaatt ... cgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGG
EST: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAG GCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGEST: gi|94475284|gb|EB704242.1|EB704242
genomic: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAGgaaaaaaatt ... cgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGG
EST: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAG GCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGEST: gi|78120761|gb|DV539145.1|DV539145
genomic: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAGgaaaaaaatt ... cgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGG
EST: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAG GCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGEST: gi|50327062|gb|CO522188.1|CO522188
genomic: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAGgaaaaaaatt ... cgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGG
EST: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAG GCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGEST: gi|78120760|gb|DV539144.1|DV539144
genomic: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAGgaaaaaaatt ... cgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGG
EST: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAG GCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGEST: gi|91878598|gb|EB408555.1|EB408555
genomic: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAGgaaaaaaatt ... cgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGG
EST: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAG GCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGEST: gi|86466052|gb|DY232425.1|DY232425
genomic: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAGgaaaaaaatt ... cgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGG
EST: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAG GCACTGGAAGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGEST: gi|86466051|gb|DY232424.1|DY232424
genomic: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAGgaaaaaaatt ... cgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGG
EST: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAG GCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGEST: gi|50327063|gb|CO522189.1|CO522189
genomic: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAGgaaaaaaatt ... cgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGG
EST: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAG GCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGG
genomic: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAGgaaaaaaatt ... cgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAGgaaaaaaatttgttgcagccgggctgcaaacggcctggtttgcagcccggctgcaacaaatttttttccgctcgggag
- - - - - GCTGGA
- - - - - - - - - - GCTGCT