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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGAGTTGAAAGTGTTTTCTACAGAAGTTGTTCGCTTTGGAAATTGTTGCAAGGATCCTCAGTGGCACAATTTGAACCGCTACTTTGATAAgtaaagttcactttggacccctgcagcctatagaggcaaaggttttagggtattgaaaattaactcaggcgcttttatgccatcaaactctttcag

Basic information

species Zea mays
transcript GRMZM2G148773_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G148773_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g65330.2 (Oryza sativa), 5'ss of exon 3
GGAAGAGTTGAAAGTGTTTTCTACAGAAGTTGTTCGCTTTGGAAATTGTTGCAAGGATCCTCAGTGGCACAATTTGAACCGCTACTTTGATAAgtaaagttcactttggacccctgcagcctatagaggcaaaggttttagggtattgaaaattaactcaggcgcttttatgccatcaaactctttcag
|||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||| || ||| | ||||||||||| ||||    |||  |||  ||||||      |||| || ||| | | |  ||      |  ||||| | ||  |||||  ||| |||||| | ||||||
GGAAGAGTTGAAAGTGTTTTCTACAGAAGTTGTTCGCTTTGGAAACCGCTGCAAGGATCCTCAGTGGCATAACTTGGATCGCTACTTTGACAAgtttgattcgtttttcacccctatgttttataaag-caatgatataggg------agtattaagttag-tgctttgctgc-atcaaaatatttcag

upper sequence: GRMZM2G148773_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA08G00670.1 (Glycine max), 5'ss of exon 3
GGAAGAGTTGAAAGTGTTTTCTACAGAAGTTGTTCGCTTTGGAAATTGTTGCAAGGATCCTCAGTGGCACAATTTGAACCGCTACTTTGATAAgtaaagttcactttggacccctgcagcctatagaggcaaaggttt-tagggtattgaaaattaac-tcaggcgcttttatgcc-atcaaactctttcag----------
||| ||||||||||| ||||||   || ||  |||| ||||||||| |||  |||||||||||||||||||| ||| |||| |||||||| ||||||  |  | | |   | |      | | ||       || |||  |||  |   ||  ||| | |     | ||| || |  | | | || ||   |          
GGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatatgaattgtactcactcaattcatctaagttttcagctttacaggaaaacaaattttagcctttcatgttttcattctgacccatcttttattgtaaattttag

upper sequence: GRMZM2G148773_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA20G31400.1 (Glycine max), 5'ss of exon 6
GGAAGAGTTGAAAGTGTTTTCTACAGAAGTTGTTCGCTTTGGAAATTGTTGCAAGGATCCTCAGTGGCACAATTTGAACCGCTACTTTGATAAgtaa----agttcactttg--gacccctgcagcctatagaggcaaaggttttagggt--attgaaaattaactcaggcgcttttatgccatcaaactctttcag------------------------------
 |||||||||||| | ||||||   |||||||| || ||||||||| |||| || |||||||| ||||||||  || | ||||| ||||| ||||||    |||| |  ||    | |  || |   | |     | ||  |  |    |  ||| ||  ||| || |     | || |  |||| |||   ||                                 
AGAAGAGTTGAAAATATTTTCTGGTGAAGTTGTGCGTTTTGGAAATCGTTGTAAAGATCCTCAATGGCACAACCTGGATCGCTATTTTGAGAAgtaattgtagttgaacttattaatctttgtatttttttagatctaatctagttaaattgatttaatcttaccttatattttcttgtaacatctaacgtgttagttatttattttttttctttgttgatgtttag

upper sequence: GRMZM2G148773_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA05G33040.1 (Glycine max), 5'ss of exon 3
GGAAGAGTTGAAAGTGTTTTCTACAGAAGTTGTTCGCTTTGGAAATTGTTGCAAGGATCCTCAGTGGCACAATTTGAACCGCTACTTTGATAAgtaaagttcactttggacccctgcagcctatagaggcaaaggttttagggtattgaaaattaa--ctcaggcgcttttatgcc-atcaaactctttcag----------
||| ||||||||||| ||||||   || ||  |||| ||||||||| |||  |||||||||||||||||||| ||| |||| |||||||| ||||||  |  | | |   | |      | | ||       ||  ||| ||| |   ||| || |  ||       ||| || |  | | | || ||   |          
GGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatataaattgtactcactcaattcatctaagtttttagcctttcgggaaaacaaattttagcctttcatattttcattctgacccatcttttattgtaaattttag

upper sequence: GRMZM2G148773_T03 (Zea mays), 5'ss of exon 3
lower sequence: Vv18s0076g00260.t01 (Vitis vinifera), 5'ss of exon 3
GGAAGAGTTGAAAGTGTTTTCTACAGAAGTTGTTCGCTTTGGAAATTGTTGCAAGGATCCTCAGTGGCACAATTTGAACCGCTACTTTGATAAgtaaagttcactttggacccctgcagcctatagag-gcaaaggttttagggtattgaaaattaa---ctcaggcgcttttatgccatcaa--actctttcag
||||||  ||||| | ||||||  |||||| || || ||||| ||| | || || ||||||||||||||||| ||| |||| |||||||| ||||||   | |  ||   |   |  | | ||            | |||| |  ||  || || |    |||| |  ||||| |||  ||    |   ||| ||
GGAAGAACTGAAAATTTTTTCTGGAGAAGTGGTCCGTTTTGGGAATCGATGTAAAGATCCTCAGTGGCACAACTTGGACCGTTACTTTGAGAAgtaatcctgatgttat-cttgtctaacttacgctttatgtgtgatttaagacatcaaagatgaggttctcatgttcttttgtgctgtcttctatgattttag