1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGTCGTCGATGTAGCCGGGGCACCAGGCACGCTCTACACCGGCGAGACCTACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAGgtcaatatcttctcccccgattgattattgcgtttgcgtgtgcttcgggttttagtgcctttttttgtaatgttgtcttcctttgttgcag
species | Zea mays |
transcript | GRMZM2G148130_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCCATGGAGGCACCTCAG GTTATATTTCTGCATCCAGCCCCGATGCATCCACACATTTACAGTAATGGAEST: gi|71427893|gb|DR808943.1|DR808943
genomic: CCCATGGAGGCACCTCAGgtcaatatct ... tttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
EST: ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAG GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGAEST: gi|211054652|gb|FL411716.1|FL411716
genomic: ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAGgtcaatatct ... tttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
EST: ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAG GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAACGGAEST: gi|76292123|gb|DV031691.1|DV031691
genomic: ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAGgtcaatatct ... tttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
EST: ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAG GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGAEST: gi|86475096|gb|DY241466.1|DY241466
genomic: ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAGgtcaatatct ... tttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
EST: CCCATGGAGGCACCTCAG GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGAEST: gi|84980323|gb|DW530672.1|DW530672
genomic: CCCATGGAGGCACCTCAGgtcaatatct ... tttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
EST: ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAG GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGAEST: gi|78115399|gb|DV533787.1|DV533787
genomic: ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAGgtcaatatct ... tttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
EST: ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAG GTTATATTTTTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
genomic: ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAGgtcaatatct ... tttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCGTCGATGTAGCCGGGGCACCAGGCACGCTCTACACCGGCGAGACCTACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAGgtcaatatcttctcccccgattgattattgcgtttgcgtgtgcttcgggttttagtgcctttttttgtaatgttgtcttcctttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG