1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTCCGCGTGCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcacatcgatcccaaaatctttgctttactattgtgctgggcgaatttcgccaattagtttagggattcagtgcagctgcttaagctgtctcataagttgttagatcatggtacttgtagtttcctgaccagttggtgcacaacaatgtgctgtatag
species | Zea mays |
transcript | GRMZM2G147671_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG GGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTCEST: gi|211071930|gb|FL190632.1|FL190632
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tgctgtatagGGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTC
EST: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG GGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTCEST: gi|31353854|gb|CD438211.1|CD438211
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tgctgtatagGGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTC
EST: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG GGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGTTTTCCAGGTTGCTCEST: gi|211069191|gb|FL190616.1|FL190616
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tgctgtatagGGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTC
EST: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG GGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTCEST: gi|211071927|gb|FL190629.1|FL190629
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tgctgtatagGGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTC
EST: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG GGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTCEST: gi|29947654|gb|CB816768.1|CB816768
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tgctgtatagGGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTC
EST: GCTTGTCACTCCCACCAGTGACCTCGGGAAGATTCTCGCCTGTATGCACG GGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTCEST: gi|211069188|gb|FL190613.1|FL190613
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tgctgtatagGGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTC
EST: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG GGTTGGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTEST: gi|5343122|gb|AI795532.1|AI795532
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tgctgtatagGGTTGG-AAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCT
EST: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG GGTTGGAAGGTGGGGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTCEST: gi|211066454|gb|FL190609.1|FL190609
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tgctgtatagGGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTC
EST: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG GGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTCEST: gi|67041049|gb|CO467304.1|CO467304
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tgctgtatagGGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTC
EST: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG GGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTCEST: gi|211047092|gb|FL234544.1|FL234544
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tgctgtatagGGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTC
EST: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG GGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTCEST: gi|47961624|gb|CN844333.1|CN844333
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tgctgtatagGGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTC
EST: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG GGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTCEST: gi|9824997|gb|BE575199.1|BE575199
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tgctgtatagGGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTC
EST: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG GGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTCEST: gi|211069189|gb|FL190614.1|FL190614
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tgctgtatagGGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTC
EST: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG GGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTCEST: gi|211069197|gb|FL190622.1|FL190622
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tgctgtatagGGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTC
EST: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG GGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCAGCWATCCAGGTTGCTCEST: gi|211069199|gb|FL190624.1|FL190624
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tgctgtatagGGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTC
EST: GCTTGTCACTCCCACCAGCGGCCTCGGGAAGATTCTCGCCTGTATGCACG GGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCAGCAATCCAGGTTGCTCEST: gi|211069196|gb|FL190621.1|FL190621
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tgctgtatagGGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTC
EST: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG GGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCAGCAATCCAGGTTGCTCEST: gi|32915709|gb|CF020521.1|CF020521
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tgctgtatagGGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTC
EST: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG GGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTCEST: gi|211069190|gb|FL190615.1|FL190615
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tgctgtatagGGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTC
EST: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG GGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTCEST: gi|31360558|gb|CD444915.1|CD444915
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tgctgtatagGGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTC
EST: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG GGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTCEST: gi|211069198|gb|FL190623.1|FL190623
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tgctgtatagGGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTC
EST: CTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGNCACG GGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCAGCAATCCAGGTTGCTEST: gi|211069194|gb|FL190619.1|FL190619
genomic: CTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATG-CACGgtaagctcac ... tgctgtatagGGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCT
EST: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG GGTYGGAAGTTGGTGCTGAGGCAAACTYGGCTGCGGCAATCCAGGTTGCTCEST: gi|211069200|gb|FL190625.1|FL190625
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tgctgtatagGGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTC
EST: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG GGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tgctgtatagGGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTCCGCGTGCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcacatcgatcccaaaatctttgctttactattgtgctgggcgaatttcgccaattagtttagggattcagtgcagctgcttaagctgtctcataagttgttagatcatggtacttgtagtttcctgaccagttggtgcacaacaatgtgctgtatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA