Sequence
atgc intronic sequence ATGC exonic sequenceTCCAGCCCAAGCTGGGTCACTGCTGCTAGTGGGACCATTTGCGGATTACTTGTTGACAGGCAAAAGGGTGGATCAGTTCAGTTTGTCATCGCTTGCTCTGgtaaggacagactaaaaatgtttctatctctgtgatcaccacaatttgtgcttctgcttctgtatataatttgtctatctgtttgcttattagagataaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G147446_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os12g05830.1 (Oryza sativa), 5'ss of exon 5
TCCAGCCCAAGCTGGGTCACTGCTGCTAGTGGGACCATTTGCGGATTACTTGTTGACAGGCAAAAGGGTGGATCAGTTCAGTTTGTCATCGCTTGCTCTGgtaag-gacagac----taaaaatgtttctatctctgtgatcaccacaatttgtgcttctgcttctgtata--taatttgtctatctgtttgcttattagagataaa
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TCCAGCCCAAGCAGGATCCCTTCTGCTAGTGGGGCCCTTTGTAGATTTCTTGTTGACAGGCAAAAGGGTGGATCACTTTGGTTTCACATCGATTGCTTTGgtaagaggcaagcctctttacaatgct-ctgtatctgatctcactgatatacatgttctagtttttccataggtaattcgccttgcagtttggttagttgt------
upper sequence: GRMZM2G147446_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os12g05780.3 (Oryza sativa), 5'ss of exon 5
TCCAGCCCAAGCTGGGTCACTGCTGCTAGTGGGACCATTTGCGGATTACTTGTTGACAGGCAAAAGGGTGGATCAGTTCAGTTTGTCATCGCTTGCTCTGgtaa--ggacagactaaaaatgtttctatctctgtgatc-accacaatttgtgcttctg---cttctgtatataatttgtctatctgtttgcttattagagataaa
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TCCAGCCCAAGCGGGATCTCTTCTGCTAGTTGGGCCCTTTGTAGATTTCTTGTTGACAGGCAAAAGAGTGGATCACTTTGGTTTCACATCGATTGCTTTGgtaagaggctagcctcattacaatgctttgtttctgatctaagttagacaaaaccacaggaattttggcatgtgacacaaaaccatgatt-----ctaaagtttc-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78115997|gb|DV534385.1|DV534385EST: TGTTGACAGGCAAAAGGGTGGATCAGTTCAGTTTGTCATCGCTTGCTCTG TTTTTCCTGGCACTCTCATGCTTCATCGCCATTGGTGTTAATCTGAGCCAA
genomic: TGTTGACAGGCAAAAGGGTGGATCAGTTCAGTTTGTCATCGCTTGCTCTGgtaaggacag ... gattctgcagTTTTTCCTGGCACTCTCATGCTTCATCGCCATTGGTGTTAATCTGAGCCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCAGCCCAAGCTGGGTCACTGCTGCTAGTGGGACCATTTGCGGATTACTTGTTGACAGGCAAAAGGGTGGATCAGTTCAGTTTGTCATCGCTTGCTCTGgtaaggacagactaaaaatgtttctatctctgtgatcaccacaatttgtgcttctgcttctgtatataatttgtctatctgtttgcttattagagataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA