1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TAAAACACTAGTTTATGATGATACATCTGATGGAACTAGAACATGGAGGCATGCTGTTAATGTGAACCTTGTTGCTGTCATTGATGGTACTCGCATTGCAgtaagtctactgttatttgtcaaaagaaattgttaagttgatcttccggtaactcaaattgtttatttataccaatggttattgctggtgtggtgtatca...
species | Zea mays |
transcript | GRMZM2G147191_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATGCTGTTAATGTGAACCTTGTTGCTGTCATTGATGGTACTCGCATTGCA AGTCAAATAATGCGAAACCAAAAGAAGCCCGGTGTCATAATAAACATTGGTEST: gi|211092469|gb|FL162379.1|FL162379
genomic: ATGCTGTTAATGTGAACCTTGTTGCTGTCATTGATGGTACTCGCATTGCAgtaagtctac ... taatcaccagAGTCAAATAATGCGAAACCAAAAGAAGCCCGGTGTCATAATAAACATTGGT
EST: ATGCTGTTAATGTGAACCTTGTTGCTGTCATTGATGGTACTCGCATTGCA AGTCAAATAATGCGAAACCAAAAGAAGCCCGGTGTCATAATAAACATTGGTEST: gi|91868066|gb|EB399902.1|EB399902
genomic: ATGCTGTTAATGTGAACCTTGTTGCTGTCATTGATGGTACTCGCATTGCAgtaagtctac ... taatcaccagAGTCAAATAATGCGAAACCAAAAGAAGCCCGGTGTCATAATAAACATTGGT
EST: ATGCTGTTAATGTGAACCTTGTTGCTGTCATTGATGGTACTCGCATTGCA AGTCAAATAATGCGAAACCAAAAGAAGCCCGGTGTCATAATAAACATTGGTEST: gi|148957626|gb|EC903733.2|EC903733
genomic: ATGCTGTTAATGTGAACCTTGTTGCTGTCATTGATGGTACTCGCATTGCAgtaagtctac ... taatcaccagAGTCAAATAATGCGAAACCAAAAGAAGCCCGGTGTCATAATAAACATTGGT
EST: ATGCTGTTAATGTGAACCTTGTTGCTGTCATTGATGGTACTCGCATTGCA AGTCAAATAATGCGAAACCAAAAGAAGCCCGGTGTCATAATAAACATTGGTEST: gi|148941301|gb|EC886203.2|EC886203
genomic: ATGCTGTTAATGTGAACCTTGTTGCTGTCATTGATGGTACTCGCATTGCAgtaagtctac ... taatcaccagAGTCAAATAATGCGAAACCAAAAGAAGCCCGGTGTCATAATAAACATTGGT
EST: ATGCTGTTAATGTGAACCTTGTTGCTGTCATTGATGGTACTCGCATTGCA AGTCAAATAATGCGAAACCAAAAGAAGCCCGGTGTCATAATAAACATTGGTEST: gi|71301436|gb|DR786749.1|DR786749
genomic: ATGCTGTTAATGTGAACCTTGTTGCTGTCATTGATGGTACTCGCATTGCAgtaagtctac ... taatcaccagAGTCAAATAATGCGAAACCAAAAGAAGCCCGGTGTCATAATAAACATTGGT
EST: ATGCTGTTAATGTGAACCTTGTTGCTGTCATTGATGGTACTCGCATTGCA AGTCAAATAATGCGAAACCAAAAGAAGCCCGGTGTCATAATAAACATTGGTEST: gi|101384704|gb|EB814398.1|EB814398
genomic: ATGCTGTTAATGTGAACCTTGTTGCTGTCATTGATGGTACTCGCATTGCAgtaagtctac ... taatcaccagAGTCAAATAATGCGAAACCAAAAGAAGCCCGGTGTCATAATAAACATTGGT
EST: ATGCTGTTAATGTGAACCTTGTTGCTGTCATTGATGGTACTCGCATTGCA AGTCAAATAATGCGAAACCAAAAGAAGCCCGGTGTCATAATAAACATTGGT
genomic: ATGCTGTTAATGTGAACCTTGTTGCTGTCATTGATGGTACTCGCATTGCAgtaagtctac ... taatcaccagAGTCAAATAATGCGAAACCAAAAGAAGCCCGGTGTCATAATAAACATTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAAACACTAGTTTATGATGATACATCTGATGGAACTAGAACATGGAGGCATGCTGTTAATGTGAACCTTGTTGCTGTCATTGATGGTACTCGCATTGCAgtaagtctactgttatttgtcaaaagaaattgttaagttgatcttccggtaactcaaattgtttatttataccaatggttattgctggtgtggtgtatca
- - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaaa