Sequence
atgc intronic sequence ATGC exonic sequenceGCTGTTGCTGCTGCAAGAATGAAGGGAGAATATCCTCAAAGAATTGGGCAGCCTGAATGTCAAgtgagattcctctcttctcgtttttctcatctgtttctttcgacaatgcaaaatatgattgttgatttatatccacttgtgcctcaatgctcatgaggtc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G146514_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os11g28270.1 (Oryza sativa), 5'ss of exon 3
GCTGTTGCTGCTGCAAGAATGAAGGGAGAATATCCTCAAAGAATTGGGCAGCCTGAATGTCAAgtgagattcctc-tcttctcgtttttctca--tctgtttctttcgacaatgcaaaatatgattgttgatttatatccacttgtgcctcaatgctcatgaggtc
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GCTGTTGCTGCTGCAAGGATGAAGGGGGAATATCCTCAAAGAATTGGTCAACCTGAATGTCAAgtgagattttccattctaacagtttcctcaattttgatacttttgatcatgtaaca-gtaacggattggtggtgttt-catatcttttaatgctc-tgatatt
upper sequence: GRMZM2G146514_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os12g21700.1 (Oryza sativa), 5'ss of exon 3
GCTGTTGCTGCTGCAAGAATGAAGGGAGAATATCCTCAAAGAATTGGGCAGCCTGAATGTCAAgtgag--attcctctcttctcgtttttctcatctgtttctttcgacaatgcaaaatatgattgttgatttatatccacttgtgcctcaat-gctcatgaggtc
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GCTGTTGCTGCTGCAAGGATGAATGGAGAGTATCCTTATAGAGTTGGTCAACCTGAGTGTCAAgtgggtactaaatcttttattaacttaataaatcaatttgtcttattttttttcttct--ttgccatgtggtgtgtgattaacttttaacagtttgctgggt-
upper sequence: GRMZM2G146514_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT5G16540.2 (Arabidopsis thaliana), 5'ss of exon 3
GCTGTTGCTGCTGCAAGAATGAAGGGAGAATATCCTCAAAGAATTGGGCAGCCTGAATGTCAAgtgagattcctctcttctcgtttttctcatctgtttctttcgacaatgcaaaatatgattgttgatttatatccacttgtgcctcaatgctcatgaggtc
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GTTATAGCAACTGCAAGGATTAAAGGAGAATACCCTGAAAGAATTGGTCAGCCTGAATGTGAGgt-agctctgtttcgaattactatcatagtaatgtcttctagttatcacattgtctcaaagct--tctatttttgttgttgtgtctgtgcag--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|56691598|gb|CX129501.1|CX129501EST: CAAGAATGAAGGGAGAATATCCTCAAAGAATTGGGCAGCCTGAATGTCAA TACTATCTGAAGACTGGCACGTGCAAGTTTGGAGCAACTTGCAAGTTTCAT
genomic: CAAGAATGAAGGGAGAATATCCTCAAAGAATTGGGCAGCCTGAATGTCAAgtgagattcc ... ccccttttagTACTATCTGAAGACTGGCACGTGCAAGTTTGGAGCAACTTGCAAGTTTCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGTTGCTGCTGCAAGAATGAAGGGAGAATATCCTCAAAGAATTGGGCAGCCTGAATGTCAAgtgagattcctctcttctcgtttttctcatctgtttctttcgacaatgcaaaatatgattgttgatttatatccacttgtgcctcaatgctcatgaggtc
- - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - AAAGAA