Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCATACCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgttatggtcttcaactacttttcttattgcagttgaagctcaaggaattaacatttccttacctactcttgtttggtcgcaaaatgcag

Basic information

species Zea mays
transcript GRMZM2G146374_T02
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33285799|gb|CF075594.1|CF075594
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGGAGCCCAATGT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGG-AGCCCAATGT
EST: gi|60400981|gb|DN233788.1|DN233788
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|440773|gb|T14794.1|T14794
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|31364283|gb|CD448638.1|CD448638
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|38229847|gb|CF920160.1|CF920160
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|32911553|gb|CF016365.1|CF016365
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|34391369|gb|CF384597.1|CF384597
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|4217768|gb|AI391764.1|AI391764
EST:     GAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: GAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|211536458|gb|FL178297.1|FL178297
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|211536457|gb|FL178296.1|FL178296
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|32831160|gb|CD970838.1|CD970838
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|32944457|gb|CF049276.1|CF049276
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGCCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|440687|gb|T14708.1|T14708
EST:     CCGTCCATCGGNTTCATCAACAAGATTTATCACCCGAATGTCGATGNGAT                         GTCTGGCTCTGTCTGTTTGGGTGTCATAAACCAGACATGG
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGG
EST: gi|32829669|gb|CD969347.1|CD969347
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|32943661|gb|CF048480.1|CF048480
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|33285782|gb|CF075577.1|CF075577
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|71325319|gb|DR799337.1|DR799337
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|453315|gb|T15289.1|T15289
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|211073942|gb|FL168131.1|FL168131
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|31628353|gb|CD526566.1|CD526566
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|4217837|gb|AI391833.1|AI391833
EST:     GAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: GAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|211536455|gb|FL178294.1|FL178294
EST:     CGTCCATCGGCTTTCATCAACA-GATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAAC-AGACATGGAGCCCCATGTT
genomic: CGTCCATCGGCTT-CATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|32910699|gb|CF015511.1|CF015511
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|32856672|gb|CD996353.1|CD996353
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCTGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|4573150|gb|AI438501.2|AI438501
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|211477511|gb|FL096882.1|FL096882
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|4217951|gb|AI391947.1|AI391947
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|33771123|gb|CF272784.1|CF272784
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|38229799|gb|CF920112.1|CF920112
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|211073944|gb|FL168133.1|FL168133
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|71432138|gb|DR813188.1|DR813188
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|71769127|gb|DR967064.1|DR967064
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|83278687|gb|DV942695.1|DV942695
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|211477514|gb|FL096885.1|FL096885
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|4217937|gb|AI391933.1|AI391933
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|32856738|gb|CD996419.1|CD996419
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAGACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|211536461|gb|FL178300.1|FL178300
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|16925233|gb|BM078301.1|BM078301
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|211073937|gb|FL168126.1|FL168126
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|211073943|gb|FL168132.1|FL168132
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|32912993|gb|CF017805.1|CF017805
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCGTAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|32829667|gb|CD969345.1|CD969345
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGGCATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|78082922|gb|DV511315.1|DV511315
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|211536462|gb|FL178301.1|FL178301
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAG
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAG
EST: gi|211539455|gb|FL178302.1|FL178302
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|211536459|gb|FL178298.1|FL178298
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|211073941|gb|FL168130.1|FL168130
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|511342|gb|T23320.1|T23320
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
EST: gi|211477513|gb|FL096884.1|FL096884
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 165

GTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCATACCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 597

GTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCATACCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 577

GTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCATACCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 188

GTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCATACCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCCGAATGTCGATGAGATgtgagcgtta ... caaaatgcagGTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG