Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTTCTGCAGCAGGTCAAGGGGCTGCTGCGGCTGGACTTCGCCGTCGCAGCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttctctcttttgctttgacctgtcatgtttcagcgtggtagaagttcaagcgcatctaattttgtctcggtctctcggaggagtatagtggtat...

Basic information

species Zea mays
transcript GRMZM2G146206_T04
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146206_T04 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g62420.2 (Oryza sativa), 5'ss of exon 3
TTTTTCTGCAGCAGGTCAAGGGGCTGCTGCGGCTGGACTTCGCCGTCGCAGCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttctctcttttgctttgacctgtcatgtttcagcgtggtagaagttcaagcgcatctaattt-tgtctcggtc--tctcggaggagtatagtggtat
| || |||| |||||| |||||  |||| |||| ||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||   | || |||     ||    ||||   ||||||            |||       |  | |||  ||  |   |     | ||  ||  |    ||  |
TGTTCCTGCCGCAGGTGAAGGGTTTGCTCCGGCCGGACTTCTCCGTCGCCGCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAGgtgagcgtc-ctcccccactcc--cctgctctgtttcccttccccttttgttttgagagagatgattagtgatttatttggcattgggtgaacaactcggcct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30160646|gb|CB924375.1|CB924375
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|211416108|gb|FL411159.1|FL411159
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|6021382|gb|AW066310.1|AW066310
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|150037302|gb|DY843516.1|DY843516
EST:     GCGCAG-ACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|38568995|gb|CF974880.1|CF974880
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|67021888|gb|CO450637.1|CO450637
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|211332034|gb|FL380493.1|FL380493
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|30591364|gb|CD052336.1|CD052336
EST:     GCGCANAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|211076634|gb|FL394053.1|FL394053
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTTCCCTGGGTCATTTTGGGGCATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|38229733|gb|CF920046.1|CF920046
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|211387019|gb|FL373417.1|FL373417
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|32851161|gb|CD990842.1|CD990842
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|149095398|gb|EE181040.2|EE181040
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|74242319|gb|DT650233.1|DT650233
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|71436570|gb|DR817620.1|DR817620
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|111146727|gb|EE258280.1|EE258280
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGGTCATTTTGGGACATT
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGG-TCATTTTGGGACATT
EST: gi|211450227|gb|FL406328.1|FL406328
EST:     GCGCAGAACTGCTGGGTGCGCAAGGNCGGNGNCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAAACCTGCAGGTGCCCTGGGGTCATTTTGGGACAT
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAA-CCTGCAGGTGCCCTGGG-TCATTTTGGGACAT
EST: gi|211461034|gb|FL374792.1|FL374792
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTTCCCTGGGTCATTTTGGGGCATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|211176657|gb|FL426231.1|FL426231
EST:     CGCAGAACTGCTGGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: CGCAGAACTGCTGGG-TGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|149097486|gb|EE183358.2|EE183358
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|32909131|gb|CF013943.1|CF013943
EST:     GCGCAAAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|149005099|gb|EE039628.2|EE039628
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|28566674|gb|CB278322.1|CB278322
EST:     GCGCAGAACTGCTGGGTGCACAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|37361179|gb|CF602468.1|CF602468
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|148971477|gb|EE022172.2|EE022172
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|37361339|gb|CF602628.1|CF602628
EST:     GCGCANAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|34391231|gb|CF384459.1|CF384459
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|28188261|gb|CB179871.1|CB179871
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGANGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|110517584|gb|EE022171.1|EE022171
EST:     CTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: CTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|71757929|gb|DR955866.1|DR955866
EST:     CTGCTGGGTGCGCAAGGGCGGCGCC-TCACCCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: CTGCTGGGTGCGCAAGGGCGGCGCCTTCA-CCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|78077610|gb|DV506044.1|DV506044
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|149105684|gb|EE291242.2|EE291242
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCCGGTGCCCTGNGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|33770896|gb|CF273190.1|CF273190
EST:     GCGCANAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|148995363|gb|EE034577.2|EE034577
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|32909130|gb|CF013942.1|CF013942
EST:     CCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: CCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|211140432|gb|FL390021.1|FL390021
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTTCCCTGGGTCATTTTGGGGCATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|33770918|gb|CF273212.1|CF273212
EST:     GCGCANAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|211405784|gb|FL400096.1|FL400096
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|67017127|gb|CO445876.1|CO445876
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|31360263|gb|CD444620.1|CD444620
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCNNNNNNNTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|71330645|gb|DR802096.1|DR802096
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|37361129|gb|CF602418.1|CF602418
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|34391269|gb|CF384497.1|CF384497
EST:     GCGCATAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|211238643|gb|FL403493.1|FL403493
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTTCCCTGGGTCATTTTGGGGCATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|31351356|gb|CD435713.1|CD435713
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|33771263|gb|CF273442.1|CF273442
EST:     GCGCANAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|38229553|gb|CF919866.1|CF919866
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|76928137|gb|DV171503.1|DV171503
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|31354853|gb|CD439210.1|CD439210
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|61118911|gb|DN559872.1|DN559872
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|211539436|gb|FL405544.1|FL405544
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTTCCCTGGGTCATTTTGGGGCATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|6021299|gb|AW066227.1|AW066227
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|211247588|gb|FL403551.1|FL403551
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|67015285|gb|CO444034.1|CO444034
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|32915342|gb|CF020154.1|CF020154
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|211123868|gb|FL376717.1|FL376717
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|211504304|gb|FL391671.1|FL391671
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|28576049|gb|CB281941.1|CB281941
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|211398253|gb|FL405436.1|FL405436
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|33770853|gb|CF273147.1|CF273147
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: gi|30160504|gb|CB924233.1|CB924233
EST:     GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG                         TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 44 (upstream exon), 45 (downstream exon)
Score: 82

TTTTTCTGCAGCAGGTCAAGGGGCTGCTGCGGCTGGACTTCGCCGTCGCAGCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCTGAGCGCAGAGCTCTGTTGGGTGAATCCAGTGAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 161

TTTTTCTGCAGCAGGTCAAGGGGCTGCTGCGGCTGGACTTCGCCGTCGCAGCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCTGAGCGCAGAGCTCTGTTGGGTGAATCCAGTGAT


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 76

TTTTTCTGCAGCAGGTCAAGGGGCTGCTGCGGCTGGACTTCGCCGTCGCAGCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCTGAGCGCAGAGCTCTGTTGGGTGAATCCAGTGAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 364

TTTTTCTGCAGCAGGTCAAGGGGCTGCTGCGGCTGGACTTCGCCGTCGCAGCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCTGAGCGCAGAGCTCTGTTGGGTGAATCCAGTGAT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTTTCTGCAGCAGGTCAAGGGGCTGCTGCGGCTGGACTTCGCCGTCGCAGCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttctctcttttgctttgacctgtcatgtttcagcgtggtagaagttcaagcgcatctaattttgtctcggtctctcggaggagtatagtggtat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA