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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAGGTCATTATTCTTGATGAGGTACATGAAAGATCCGTGGAATCTGATCTTGTCCTTGCTAGTATCAAGCAGTTTTTGATGAAAAAGAGTGACTTAAGgtaagcaatagagtaatttccactagtggatggtacaccgtgtttgtcttttagcagtaattgttccctttgtgtataaataaatagttgtctactatctgctgttggtatgtcaccgtgttacccttggcag

Basic information

species Zea mays
transcript GRMZM2G146047_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146047_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g15300.2 (Oryza sativa), 5'ss of exon 3
ATAAGGTCATTATTCTTGATGAGGTACATGAAAGATCCGTGGAATCTGATCTTGTCCTTGCTAGTATCAAGCAGTTTTTGATGAAAAAGAGTGACTTAAGgtaagcaatagagtaatttccactagtggatggtacaccgtgtttgtcttttagcagtaattgttcccttt--gtgtataaataaatag--ttgtctactatctgctg-ttggtatgtca----ccgtgttacccttggcag--
||||||| |||||||| |||||  |||||||||| || ||||||||||| |||||||| ||  || ||||||||||| |||||||||||| |||||| ||||||    |  ||| |  | |  || ||  |  | ||         |||||||| ||| ||  ||||  |      || |||   |  |  ||   | ||  |||||| ||| || | |      | |    | |||| ||   
ATAAGGTTATTATTCTCGATGAAATACATGAAAGGTCAGTGGAATCTGACCTTGTCCTCGCCTGTGTCAAGCAGTTTATGATGAAAAAGAATGACTTGAGgtaattgctgcagtgacctgctttaatgctt--tccattaaacc-atcttttagtagtgatgattccaatccaccttaaaaactgactgccttactttcttcctgctgattgataagacgtgtgtcattcctctcttgacatag

upper sequence: GRMZM2G146047_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT2G47680.1 (Arabidopsis thaliana), 5'ss of exon 3
ATAAGGTCATTATTCTTGATGAGGTACATGAAAGATCCGTGGAATCTGATCTTGTCCTTGCTAGTATCAAGCAGTTTTTGATGAAAAAGAGTGACTTAAGgtaagcaatagagtaatttccacta-gtggatggtacaccgtgtttgtcttttagca-gtaattgttccctttgtgtataaataaat-agttgtctactatctgctgttggtatgtca-ccgtgttacccttggcag--------------------------------------------------
| ||||| || ||||||||||| || ||||||||||| ||||| || |||||||| ||||   || | ||||||||| | ||||| || | |||| | |||| |  |      |      ||  | ||   |  |  |  ||  ||   || |  |  ||  ||||      ||     | |||| | |||| | ||||||      |   ||  ||| |||||||| | | |  |                                                   
ACAAGGTTATCATTCTTGATGAAGTGCATGAAAGATCTGTGGAGTCAGATCTTGTTCTTGTCTGTGTTAAGCAGTTTCTCATGAAGAATAATGACCTCAGgttataacccttttctacaacatgatgtaattactttaaggttcttaaattgtttcgcgtggttgtgtttgctgatagaagataagtcagttctatactataccgattcattacttcaaccgtgttatcatcgataacgtttgtattgaggtcatggttattaaagaggtgatttgattaattacag

upper sequence: GRMZM2G146047_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv07s0005g00310.t01 (Vitis vinifera), 5'ss of exon 3
ATAAGGTCATTATTCTTGATGAGGTACATGAAAGATCCGTGGAATCTGATCTTGTCCTTGCTAGTATCAAGCAGTTTTTGATGAAAAAGAGTGACTTAAGgtaagcaatagagtaatttccactagtggatggtacaccgtgtttgtcttttagcagtaattgttccctttgtgtataaataaatagttgtctactatctgctgttggtatgtcaccgtgttacccttggcag
| || || || ||||||||||| || ||||||||||| ||||| || |||||||| ||||   || | ||||||||| || |||   |   ||| || ||||  |   || |    ||||   || |   |  |    |   |||   |   || | || |||||    ||     |   || |||  ||   | |||   ||  ||                          
ACAAAGTTATAATTCTTGATGAAGTGCATGAAAGATCGGTGGAGTCGGATCTTGTTCTTGTATGTGTGAAGCAGTTTATGCTGAGGGATTATGATTTGAGgttgg---tatatc--tttctgttattttcttctctttctatttttgatgccagtaata-ttgttgaagtttctggtttctacatatctggtca-tattcacttctg--------------------------