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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATGCTGAGAACTGTGGAAAGATGCGAGCACTAGAAAGGCTTCTGTCATTATGGACTGGACAGGGTGACAAGATTCTTCTTTTCAGTTATTCTGTCAGgttgttcatttatgcactaacatttagctcataagctggcagcctagcaaagttatattgtcatgcactttaatcccatcggttccaatttatatcgaca...

Basic information

species Zea mays
transcript GRMZM2G146041_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146041_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g15890.1 (Oryza sativa), 5'ss of exon 4
GTGATGCTGAGAACTGTGGAAAGATGCGAGCACTAGAAAGGCTTCTGTCATTATGGACTGGACAGGGTGACAAGATTCTTCTTTTCAGTTATTCTGTCAGgttgttcatttatgcactaacatttagctcataagctggca-gcctagcaaagttatattgtcatgcactttaatcccatcggttccaatttatatcgaca-
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GTGATGCAGAACATTGTGGAAAGATGCGTGCGTTGGAAAGACTATTGTCATTATGGACTCTGCAGGGTGACAAAATTCTTCTTTTCAGCTATTCAGTCAGgtgagtggttatccccaatgtgtccaatgcttcagtaagcatgaagattaaagcaagaataacatatctcacaagtcagaaaatttc--tttgttttaaacc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91875454|gb|EB405411.1|EB405411
EST:     TTATGGACTGGACAGGGTGACAAGATTCTTCTTTTCAGTTATTCTGTCAG                         GATGCTTGACATACTAGAGAAGTTTCTCATAAGGAAGGGTTATTGCTTTTC
genomic: TTATGGACTGGACAGGGTGACAAGATTCTTCTTTTCAGTTATTCTGTCAGgttgttcatt ... ttacatgcagGATGCTTGACATACTAGAGAAGTTTCTCATAAGGAAGGGTTATTGCTTTTC