1 5' 3' | 2 5' 3' | 3 5' 3' |
TGCTACTAGCATGCATTTGGATAATGATGTGGAGGACCTAGAGATGTTACTTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCGgttagtctctttatccacactgaaacataatgtattctcctgtattgtgggttctgtaattatatggtgctgtctcatgagacataaacataatctgctt...
species | Zea mays |
transcript | GRMZM2G145794_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCG GTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGACEST: gi|211090936|gb|FL430965.1|FL430965
genomic: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCGgttagtctct ... aataaaacagGTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGAC
EST: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCG GTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGACEST: gi|211090937|gb|FL430966.1|FL430966
genomic: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCGgttagtctct ... aataaaacagGTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGAC
EST: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCG GTTCGGGAGTATATTGATGACACAGAAGAGTACGTCAACATTCAACTCGACEST: gi|86469276|gb|DY235646.1|DY235646
genomic: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCGgttagtctct ... aataaaacagGTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGAC
EST: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCG GTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGACEST: gi|89759049|gb|DY687995.1|DY687995
genomic: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCGgttagtctct ... aataaaacagGTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGAC
EST: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCG GTTCGGGAGTATATTGATGEST: gi|149086561|gb|EE176104.2|EE176104
genomic: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCGgttagtctct ... aataaaacagGTTCGGGAGTATATTGATG
EST: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCG GTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGACEST: gi|71760155|gb|DR958092.1|DR958092
genomic: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCGgttagtctct ... aataaaacagGTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGAC
EST: TGAGGGCNTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCG GTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGACEST: gi|76292915|gb|DV032483.1|DV032483
genomic: TGA-GGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCGgttagtctct ... aataaaacagGTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGAC
EST: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCG GTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGACEST: gi|88747345|gb|DY531486.1|DY531486
genomic: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCGgttagtctct ... aataaaacagGTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGAC
EST: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCG GTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGACEST: gi|33468182|gb|CF245231.1|CF245231
genomic: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCGgttagtctct ... aataaaacagGTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGAC
EST: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCG GTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGACEST: gi|211093386|gb|FL430967.1|FL430967
genomic: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCGgttagtctct ... aataaaacagGTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGAC
EST: TTGAGGCCTACTTCATGCAGCTGGATGGAATCCGCAACAGAATTTTGTCG GTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGACEST: gi|60351854|gb|DN218827.1|DN218827
genomic: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCGgttagtctct ... aataaaacagGTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGAC
EST: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCG GTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGACEST: gi|76016576|gb|DT943746.1|DT943746
genomic: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCGgttagtctct ... aataaaacagGTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGAC
EST: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCG GTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGACEST: gi|71759716|gb|DR957653.1|DR957653
genomic: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCGgttagtctct ... aataaaacagGTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGAC
EST: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCG GTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGACEST: gi|91055353|gb|EB165771.1|EB165771
genomic: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCGgttagtctct ... aataaaacagGTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGAC
EST: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCG GTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGACEST: gi|71758746|gb|DR956683.1|DR956683
genomic: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCGgttagtctct ... aataaaacagGTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGAC
EST: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCG GTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGACEST: gi|211210677|gb|FL438027.1|FL438027
genomic: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCGgttagtctct ... aataaaacagGTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGAC
EST: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCG GTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGACEST: gi|93016531|gb|EB642051.1|EB642051
genomic: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCGgttagtctct ... aataaaacagGTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGAC
EST: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCG GTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGAC
genomic: TTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCGgttagtctct ... aataaaacagGTTCGGGAGTATATTGATGACACAGAAGACTACGTCAACATTCAACTCGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTACTAGCATGCATTTGGATAATGATGTGGAGGACCTAGAGATGTTACTTGAGGCCTACTTCATGCAGCTGGATGGAATTCGCAACAGAATTTTGTCGgttagtctctttatccacactgaaacataatgtattctcctgtattgtgggttctgtaattatatggtgctgtctcatgagacataaacataatctgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA