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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTTGCAGTGAAATCCGCAAGTATCAGAAGAGCACTGACCTGCTCATAAGGAAGCTTCCGTTCCAAAGGCTTGTCAGGGAGATTGCCCAGGATTTCAAGgtgagatttcattttcataccgtcatgtaatctaggaattctgaagtaaacgtagaagtgcacttctcaacccgttgtatttgtgcag

Basic information

species Zea mays
transcript GRMZM2G145758_T02
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16379500|gb|BI992987.1|BI992987
EST:     GGAAGCTTCCGTTCCAAAGGCTTGTCAGGGAGATTGCCCAGGATTTCAAG                         ACTGATCTTCGTTTCCAGAGCCATGCGGTGCCTGCGCTGCAGGAGGCTGCG
genomic: GGAAGCTTCCGTTCCAAAGGCTTGTCAGGGAGATTGCCCAGGATTTCAAGgtgagatttc ... atttgtgcagACTGATCTTCGTTTCCAGAGCCATGCGGTGCTTGCGCTGCAGGAGGCTGCG
EST: gi|32906253|gb|CF011066.1|CF011066
EST:     GAAGCTTCCGTTCCAAAGGCCTTGTCAGGGAGATTGCCCAGGATTTCAAG                         ACTGATCTTCGTTTCCAGAGCCATGCGGTGCTTGCGCTGCAGGAGGCTGCG
genomic: GAAGCTTCCGTTCCAAAGG-CTTGTCAGGGAGATTGCCCAGGATTTCAAGgtgagatttc ... atttgtgcagACTGATCTTCGTTTCCAGAGCCATGCGGTGCTTGCGCTGCAGGAGGCTGCG
EST: gi|21395091|gb|BQ539521.1|BQ539521
EST:     GGAAGCTTCCGTTCCAAAGGCTTGTCAGGGAGATTGCCCAGGATTTCAAG                         ACTGATCTTCGTTTCCAGAGCCATGCGGTGCTTGCGCTGCAGGAGGCTGCG
genomic: GGAAGCTTCCGTTCCAAAGGCTTGTCAGGGAGATTGCCCAGGATTTCAAGgtgagatttc ... atttgtgcagACTGATCTTCGTTTCCAGAGCCATGCGGTGCTTGCGCTGCAGGAGGCTGCG
EST: gi|78023252|gb|DV491639.1|DV491639
EST:     GGAAGCTTCCGTTCCAGAGGCTTGTCAGGGAGATTGCCCAGGATTTCAAG                         ACTGATCTTCGTTTCCAGAGCCATGCGGTGCTTGCGCTGCAGGAGGCTGCG
genomic: GGAAGCTTCCGTTCCAAAGGCTTGTCAGGGAGATTGCCCAGGATTTCAAGgtgagatttc ... atttgtgcagACTGATCTTCGTTTCCAGAGCCATGCGGTGCTTGCGCTGCAGGAGGCTGCG
EST: gi|5804559|gb|AI979529.1|AI979529
EST:     GGAAGCTTCCGTTCCAGAGGCTTGTCAGGGAGATTGCCCAGGATTTCAAG                         ACTGATCTTCGTTTCCAGAGCCATGCGGTGCTTGCGCTGCAGGAGGCTGCG
genomic: GGAAGCTTCCGTTCCAAAGGCTTGTCAGGGAGATTGCCCAGGATTTCAAGgtgagatttc ... atttgtgcagACTGATCTTCGTTTCCAGAGCCATGCGGTGCTTGCGCTGCAGGAGGCTGCG
EST: gi|5915415|gb|AW053056.1|AW053056
EST:     GGAAGCTTCCGTTCCAGAGGCTTGTCAGGGAGATTGCCCAGGATTTCAAG                         ACTGATCTTCGTTTCCAGAGCCATGCGGTGCTTGCGCTGCAGGAGGCTGCG
genomic: GGAAGCTTCCGTTCCAAAGGCTTGTCAGGGAGATTGCCCAGGATTTCAAGgtgagatttc ... atttgtgcagACTGATCTTCGTTTCCAGAGCCATGCGGTGCTTGCGCTGCAGGAGGCTGCG
EST: gi|28983424|gb|BQ538597.2|BQ538597
EST:     GGAAGCTTCCGTTCCAAAGGCTTGTCAGGCAGATTGCCCAGGATTTCAAG                         ACTGATCTTCGTTTCCAGAGCCATGCGGTGCTTGCGCTGCAGGAGGCTGCG
genomic: GGAAGCTTCCGTTCCAAAGGCTTGTCAGGGAGATTGCCCAGGATTTCAAGgtgagatttc ... atttgtgcagACTGATCTTCGTTTCCAGAGCCATGCGGTGCTTGCGCTGCAGGAGGCTGCG
EST: gi|32906254|gb|CF011067.1|CF011067
EST:     GGAAGCTTCCGTTCCAAAGGCTTGTCAGGGAGATTGCCCAGGATTTCAAG                         ACTGATCTTCGTTTCCAGAGCCATGCGGTGCTTGCGCTGCAGGAGGCTGCG
genomic: GGAAGCTTCCGTTCCAAAGGCTTGTCAGGGAGATTGCCCAGGATTTCAAGgtgagatttc ... atttgtgcagACTGATCTTCGTTTCCAGAGCCATGCGGTGCTTGCGCTGCAGGAGGCTGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTTTGCAGTGAAATCCGCAAGTATCAGAAGAGCACTGACCTGCTCATAAGGAAGCTTCCGTTCCAAAGGCTTGTCAGGGAGATTGCCCAGGATTTCAAGgtgagatttcattttcataccgtcatgtaatctaggaattctgaagtaaacgtagaagtgcacttctcaacccgttgtatttgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT