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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATTGTCTCAAGCAATGCCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagctgaacttccacctctttaaaaagatggcacatgcagcagtttaaacgtagatttacattgaaacttgccactcatttgttgcatgcag

Basic information

species Zea mays
transcript GRMZM2G145638_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G145638_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 7
CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATTGTCTCAAGCAATGCCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagctgaacttccacctctttaaaaagatggcacatgcagcagtttaaacgtagatttacattgaaacttg-ccactcatttgttgcatgcag
||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||| ||  ||||||||||| |||||||||||||| |||||||| ||  |  ||  | |  |    | |  |    |    |||  |  |    |||| ||| |||  ||| ||||||| |||   |||  |    |||||
CAAGGAGATCTCCAAGAGCAATGTGGTCGATGACATGGTCTCAAGCAATGCCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaa---aaacttagttttggattaaaacttgtccatgtattcttc---tgcag

upper sequence: GRMZM2G145638_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 7
--------------------------------CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATTGTCTCAAGCAATGCCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagctgaacttccacctctttaaaaagatggcacatgcagcagtttaaacgtagatttacattgaaacttgccactcatttgttgcatgcag
                                |||||| ||||||||||||||||| || || || || |||   ||||||||||| ||||||| ||| || || |||||||| ||||||||||| || ||||| | || | |  ||       ||  ||      |  |   | |||                                                    
ATGAATCTCTCGGCTCCACAAACCTTCCGCTCCAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGgtgaacatcccgaccatgttgttgttattaaggtatatttgtttcacccatttttcactatttctttctcttgt-cag----------------------------------------------------

upper sequence: GRMZM2G145638_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA05G31450.4 (Glycine max), 5'ss of exon 4
CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATTGTCTCAAGCAATGCCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagctgaacttccacctctttaaaaagatggcacatgcagcagtttaaacgtagatttacattgaaacttgccactcatttgttgcatgcag
 ||||| |||||||||||||| || || || || || |||   ||||| ||||| ||||||| |||||| || ||||| || ||||| |||||||| |||||   ||   |  | ||     | ||||   |     | |       | || ||  |   ||||   |||| ||||     |   |||||   |||||
TAAGGAAATCTCCAAGAGCAATGTTGTTGACGATATGGTCAACAGCAACGCCATCCTCTATGAGCCCGGTGAACATCCAGACCATGTGGTTGTCATTAAGgta-attttttttatttttttatttttagtcactactccctctttcaaattcaattggttattttt-ttgacactt--tggtttattgtt-tttgcag

upper sequence: GRMZM2G145638_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA18G02210.4 (Glycine max), 5'ss of exon 7
CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATTGTCTCAAGCAATGCCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagctgaacttccacctctttaaaaagatggcacatgcagcagtttaaacgtagatttacattgaaacttgccactcatttgttgcatgcag
|||||| ||||||||||||||||| || || || || |||   ||||||||||| ||||||| ||| || || |||||||| ||||||||||| || ||||| | || | |  ||  |||  | |    |    |  | | ||       ||  |  |  || | | |||    |||||     ||||  |       
CAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgtttcac--ccatttttcactatttctttctcttgtcaggtctttgat-tctatctgctttg----ttgcc-----tttgcag-------

upper sequence: GRMZM2G145638_T02 (Zea mays), 5'ss of exon 3
lower sequence: PP1S55_204V6.1 (Physcomitrella patens), 5'ss of exon 6
CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATTGTCTCAAGCAATGCCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgt-ctgttagctgaacttccacctctttaaaaagatggcacatgcagcagtttaaacgtagatttacattgaaacttgcc---actcat-ttgttgcatgcag------------------------------------
||||||||||||||||||||| || ||||| ||||| ||  | |||||| | ||||| || | |||||| || |||||||| || ||| |||| ||||||||  | ||| ||  ||| ||| | ||  |   |       || ||  || ||      |   || | | |  || ||| |   | |||    | | |  | |                                     
CAAGGAGATCTCCAAGAGCAATGTAGTGGACGACATGGTGGCTAGCAATTCGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttatctctact-ccagccctgcagtcaatgttttcaagc--catttcggctttgatttcagactccaagttgtctgcattcacaccgattctcgaatcttcctcttaaccaaaatcaatgacggcgtctgcag

upper sequence: GRMZM2G145638_T02 (Zea mays), 5'ss of exon 3
lower sequence: EFJ37320 (Selaginella moellendorffii), 5'ss of exon 7
CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATTGTCTCAAGCAATGCCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagctgaacttccacctctttaaaaagatggcacatgcagcagtttaaacgtagatttacattgaaacttgccactcatttgttgcatgcag
|||||| |||||||||||||| ||||| || ||||| || || |||||||||||  | |    |||||| || ||||| ||||||||  | |||||||||||     | |  |   |  |  | |||  |  ||   | |  |     | ||     | | |||  |                               
CAAGGAAATCTCCAAGAGCAATGTGGTTGACGACATGGTTTCTAGCAATGCCATCTTGTTCAAGCCCGGTGAACATCCTGATCATGTGATCGTCATCAAGgt---aaaacaaacgcttgatttttttctagggaaaactcccgagtttgctt-----tcgttttctag------------------------------