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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACCATGCAAATAATCTTGCATCTAAAATCCGCAGCAACTTGACTAATTCAATGAAAGCTCTGGGTGTGGATATACTCACTGGTATTGGCACCATTGTGgtgggtcacctacatctttcctgtgtttgtcttaaaaatcaaatattttgttattaaaatgtcatgttggttgcaagcatcatcttgtccaggtataaga...

Basic information

species Zea mays
transcript GRMZM2G145595_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G145595_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g23610.1 (Oryza sativa), 5'ss of exon 3
TGACCATGCAAATAATCTTGCATCTAAAATCCGCAGCAACTTGACTAATTCAATGAAAGCTCTGGGTGTGGATATACTCACTGGTATTGGCACCATTGTGgtgggtcacctacatctttcctgtgtttgtcttaaaaatcaaatattttgttatta-aaatgtcatgttggttgcaagcatcatcttgtccaggtataaga--
 || |||||||||||||| || |||||||| || ||||||||||||||||| ||||||||| |||||||||||||| | |||||| |||||||||||||||| ||||| ||| ||||  | |||  ||||| | |||  || | | ||| ||||||    |||    |  ||||||||  | | | |   ||  | | |    
AGATCATGCAAATAATCTGGCCTCTAAAATTCGTAGCAACTTGACTAATTCGATGAAAGCTTTGGGTGTGGATATATTGACTGGTTTTGGCACCATTGTGgtaggtcatctatatctcccttgt--ttgtcatgaaag-cagacaatttattattatgggtgttgcatatgttgcaagagtgagcattgacatattttatttt

upper sequence: GRMZM2G145595_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA07G37050.2 (Glycine max), 5'ss of exon 3
TGACCATGCAAATAATCTTGCATCTAAAATCCGCAGCAACTTGACTAATTCAATGAAAGCTCTGGGTGTGGATATACTCACTGGTATTGGCACCATTGTGgtgggtcacctacatctttcctgtgtttgtcttaaaa-atca--aatattttgttattaaaatg-tcatgttggttgcaagcatcatcttgtccaggtataaga
||| ||||| ||||||||||| || |||||||| |  |||||||| || ||||||||||| || || || || ||||| |||||| |||| || ||| ||||         |||| || ||||||    |  ||    || |  |||  || | ||| |  ||| |||      |||  |     || || |  |  || || |
TGATCATGCTAATAATCTTGCTTCGAAAATCCGTAATAACTTGACCAACTCAATGAAAGCGCTTGGAGTAGACATACTTACTGGTTTTGGAACTATTCTGgtaatgtg---acatattgcctgtgaggattctatggcattataaatgcttagatatcagtatgatcactcgctttgtgatgggaatgtt-tgaaaatagaaaa

upper sequence: GRMZM2G145595_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv05s0077g01210.t01 (Vitis vinifera), 5'ss of exon 3
TGACCATGCAAATAATCTTGCATCTAAAATCCGCAGCAACTTGACTAATTCAATGAAAGCTCTGGGTGTGGATATACTCACTGGTATTGGCACCATTGTGgtgggtcacctac---------------atctttcctgtgtttgtcttaaaaatcaaatattttgttatta-aaatgtcatg------ttggttgcaagcatcatcttgtcca--ggtataaga---------------------------------------------------------------------
||||||||| ||||| ||||| |||||||| || |  || ||||||||||||||||||||  |||||||||| ||| | || ||  |||| || ||| ||||  ||   | |                |||||||  |   ||    | |||  |   | | |     ||   ||  |||||      | | | |    | | | | |||||   | | ||| |                                                                     
TGACCATGCCAATAACCTTGCTTCTAAAATTCGTAATAATTTGACTAATTCAATGAAAGCATTGGGTGTGGACATATTAACAGGCGTTGGAACAATTTTGgtaagttgtccatgctgacaaagacaagatctttcaagcaattcaaattaaagcctggtttatgacagttttgaacttcatggaaaaatggatggtttacttgagcctgtcctatgctttaataaccaatctcatggttacaaaagtcctaatgatatttattatcaataatttcatttatgaatttattcag

upper sequence: GRMZM2G145595_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv14s0060g01410.t01 (Vitis vinifera), 5'ss of exon 2
TGACCATGCAAATAATCTTGCATCTAAAATCCGCAGCAACTTGACTAATTCAATGAAAGCTCTGGGTGTGGATATACTCACTGGTATTGGCACCATTGTGgtgggtcacctacatc-tttcctgtgtttgtct-taaaaatcaaatattttgttattaaa--atgtcatgttggttgcaagcatcatcttgtc-caggtataaga----------------------------------------------------
||| ||||||||||||||||| || |||||| | || |||||||| |||||| |||| | ||| || || | ||||||    ||| ||||||| ||| ||||   |  | ||     | || || ||| || | |   |||    | |||  ||||  |   |||  |   | |         | || |||       |||||                                                      
TGATCATGCAAATAATCTTGCCTCAAAAATCAGAAGTAACTTGACCAATTCATTGAAGGGTCTTGGAGTTGTTATACTTGAAGGTGTTGGCACAATTTTGgtacattccatatgctatctcttgagttagtttattttaattttgtttttaattatgcattcatgagaatctagccattcaggttattttgaagttaatataattttatgtttgcactggttagaattatgattttactatttatggatttattcag

upper sequence: GRMZM2G145595_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv14s0060g01330.t01 (Vitis vinifera), 5'ss of exon 3
TGACCATGCAAATAATCTTGCATCTAAAATCCGCAGCAACTTGACTAATTCAATGAAAGCTCTGGGTGTGGATATACTCACTGGTATTGGCACCATTGTGgtgggtcacctacatc-tttcctgtgtttgtct-taaaaatcaaatattttgttattaaa--atgtcatgttggttgcaagcatcatcttgtc-caggtataaga----------------------------------------------------
||| ||||||||||||||||| || |||||| | || |||||||| |||||| |||| | ||| || || ||||||||    ||| ||||||| ||| ||||   |  | || |   | || || ||| || | |   |||    | |||  ||||  |   |||  |   | |         | || |||       |||||                                                      
TGATCATGCAAATAATCTTGCCTCAAAAATCAGAAGTAACTTGACCAATTCATTGAAGGGTCTTGGAGTTGATATACTTGAAGGTGTTGGCACAATTTTGgtacattccatatactatctcttgagttagtttattttaattttgtttttaattatgcattcatgagaatctagccattcaggttattttgaagttaatataattctatgtttgcactggttagaattatgattttactatttatggatttattcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149070832|gb|EE159242.2|EE159242
EST:     CAATGAAAGCTCTGGGTGTGGATATACTCACTGGTATTGGCACCATTGTG                         GGGAAGCAAAAAGTGAGATATGGGAAAGTTGGTTTCCCAGACAATGAAATC
genomic: CAATGAAAGCTCTGGGTGTGGATATACTCACTGGTATTGGCACCATTGTGgtgggtcacc ... atatctgtagGGGAAGCAAAAAGTGAGATATGGGAAAGTTGGTTTCCCAGACAATGAAATC
EST: gi|89249248|gb|DY621034.1|DY621034
EST:     CAATGAAAGCTCTGGGTGTGGATATACTCACTGGTATTGGCACCATTGTG                         GGGAAGCAAAAAGTGAGATATGGGAAAGTTGGTTTCCCAGACAATGAAATC
genomic: CAATGAAAGCTCTGGGTGTGGATATACTCACTGGTATTGGCACCATTGTGgtgggtcacc ... atatctgtagGGGAAGCAAAAAGTGAGATATGGGAAAGTTGGTTTCCCAGACAATGAAATC