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 5'  3'   		2  
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 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCGACTGCTGGTCCTCTACGCCCCATTGTTCAATGCCAGACTTTAAAGTACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcattgctttgttgttgtccttcctgtgttacccatgaaccatgctgctgtttcaaatgtcctagtttgtttcgtagttgtgaaatcaaatgaat...

Basic information

species Zea mays
transcript GRMZM2G145280_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G145280_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g06560.1 (Oryza sativa), 5'ss of exon 1
CCCGACTGCTGGTCCTCTACGCCCCATTGTTCAATGCCAGACTTTAAAGTACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaag-cattgctttgttgttgtccttcctgtgttacccatgaaccatgctgctgtttcaaatgtcctagtttgtttcgtagttgtgaaatcaaatgaat-
                                                       |||||||| ||||||||||||||||||| |||||||| ||||||||||| | | ||| | |     | |  ||   ||    |  || || |  |    | |||   |   |   |  ||||| |     | |   | || |   | 
-------------------------------------------------------ATGAAGTCGAGGGCTGGGAGAGGCTTTATCCTTGAGGTGCTGAAGgtgatgtccttgttgtaccactatatttga-gtagcccttatcaatctagtgtatcttttggac-cctgggggtgtttagatccaggggtgtaaagtttttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211441590|gb|FK945757.1|FK945757
EST:     ACAMCATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|60400340|gb|DN233147.1|DN233147
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|5343128|gb|AI795538.1|AI795538
EST:     ACAACATGAAGTCAAGGGCTGTGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTGGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211389705|gb|FL262572.1|FL262572
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|32850142|gb|CD989823.1|CD989823
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTTCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211389702|gb|FL262569.1|FL262569
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|15198791|gb|BI423486.1|BI423486
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211279209|gb|FL194214.1|FL194214
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211281009|gb|FL194228.1|FL194228
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|60340124|gb|DN207097.1|DN207097
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|89761946|gb|DY689760.1|DY689760
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211426206|gb|FL392503.1|FL392503
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211277402|gb|FL194200.1|FL194200
EST:     ACAACATGAAGTCAAGAGCTGGGAGAGGGTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTG-TATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|213171408|gb|FM192327.1|FM192327
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|33093353|gb|CF053347.1|CF053347
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|60337043|gb|DN204016.1|DN204016
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|113703968|gb|EE681472.1|EE681472
EST:     GGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: GGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|30705140|gb|CD058672.1|CD058672
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|8577151|gb|BE129788.1|BE129788
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211281011|gb|FL194230.1|FL194230
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|32838732|gb|CD978413.1|CD978413
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211281010|gb|FL194229.1|FL194229
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAAACCATTGGTATTTCTGTTGA
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAA-CCATTGGTATTTCTGTTGA
EST: gi|149112712|gb|EE191403.2|EE191403
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211281012|gb|FL194231.1|FL194231
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|74234820|gb|DT642734.1|DT642734
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|71766827|gb|DR964764.1|DR964764
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211389701|gb|FL262568.1|FL262568
EST:     ACAACATGAAGTCAAGAGCTGGGAGAGGGTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|76292773|gb|DV032341.1|DV032341
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|29947149|gb|CB816506.1|CB816506
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|78106398|gb|DV524816.1|DV524816
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|74237761|gb|DT645675.1|DT645675
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|32912483|gb|CF017295.1|CF017295
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211271424|gb|FK945754.1|FK945754
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211281013|gb|FL194232.1|FL194232
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211441593|gb|FK945760.1|FK945760
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|37416945|gb|CF646124.1|CF646124
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAAGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|60356573|gb|DN223546.1|DN223546
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|32849964|gb|CD989645.1|CD989645
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211389707|gb|FL262574.1|FL262574
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|60401554|gb|DN234361.1|DN234361
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|32927581|gb|CF032393.1|CF032393
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|28873512|gb|CB329492.1|CB329492
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|32927578|gb|CF032390.1|CF032390
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGTTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|15005379|gb|BI325446.1|BI325446
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|74234821|gb|DT642735.1|DT642735
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|8665447|gb|BE186263.1|BE186263
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211389706|gb|FL262573.1|FL262573
EST:     ACAACATGAAGTCAAGAGCTGGGAGAGGGTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|60340943|gb|DN207916.1|DN207916
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 3417

CCCGACTGCTGGTCCTCTACGCCCCATTGTTCAATGCCAGACTTTAAAGTACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGATCACCGCCGCAAGAACAAATCCCTTGAGGGACTGCAGGCCAATGTCCAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 2293

CCCGACTGCTGGTCCTCTACGCCCCATTGTTCAATGCCAGACTTTAAAGTACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGATCACCGCCGCAAGAACAAATCCCTTGAGGGACTGCAGGCCAATGTCCAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1534

CCCGACTGCTGGTCCTCTACGCCCCATTGTTCAATGCCAGACTTTAAAGTACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGATCACCGCCGCAAGAACAAATCCCTTGAGGGACTGCAGGCCAATGTCCAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 2434

CCCGACTGCTGGTCCTCTACGCCCCATTGTTCAATGCCAGACTTTAAAGTACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGATCACCGCCGCAAGAACAAATCCCTTGAGGGACTGCAGGCCAATGTCCAGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCGACTGCTGGTCCTCTACGCCCCATTGTTCAATGCCAGACTTTAAAGTACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcattgctttgttgttgtccttcctgtgttacccatgaaccatgctgctgtttcaaatgtcctagtttgtttcgtagttgtgaaatcaaatgaat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatcaaa